RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 SMYD4Q8IYR2 804 aaPredicted RBP11.36□□□□□ -0.59
VPS53-206ENST00000570359 UIMC1Q96RL1 719 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 PHF20Q9BVI0 1012 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 PCDHAC2Q9Y5I4 1007 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 LY75O60449 1722 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 DDAH1O94760 285 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 SERPINC1P01008 464 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 RBM5P52756 815 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS53-206ENST00000570359 STX17P56962 302 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 TTC38Q5R3I4 469 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 LRRC47Q8N1G4 583 aaKnown RBP11.36□□□□□ -0.59
VPS53-206ENST00000570359 RASSF8Q8NHQ8 419 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 EYA3Q99504 573 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 UBA5Q9GZZ9 404 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 A0A087X0B3 334 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 MPHOSPH10O00566 681 aaKnown RBP11.35□□□□□ -0.59
VPS53-206ENST00000570359 CALM1P0DP23 149 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 CALM2P0DP24 149 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 CALM3P0DP25 149 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 ADRA2BP18089 450 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 TCP10Q12799 353 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 PTGDRQ13258 359 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 SYMPKQ92797 1274 aaKnown RBP11.35□□□□□ -0.59
VPS53-206ENST00000570359 ZC3H12CQ9C0D7 883 aaKnown RBP11.35□□□□□ -0.59
VPS53-206ENST00000570359 BLZF1Q9H2G9 400 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 TTF2Q9UNY4 1162 aaKnown RBP11.35□□□□□ -0.59
VPS53-206ENST00000570359 HPSEQ9Y251 543 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 FLT1P17948 1338 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 FAM205AQ6ZU69 1335 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 LDHCP07864 332 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 RASA1P20936 1047 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 CDK8P49336 464 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 POSTNQ15063 836 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 CRY2Q49AN0 593 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 TYW1BQ6NUM6 668 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 DPP8Q6V1X1 898 aaPredicted RBP11.35□□□□□ -0.59
VPS53-206ENST00000570359 KIAA1524Q8TCG1 905 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 TMEM47Q9BQJ4 181 aa11.35□□□□□ -0.59
VPS53-206ENST00000570359 PTPREP23469 700 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 KIF5BP33176 963 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 CFAP100Q494V2 611 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 DPF2Q92785 391 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 FANCLQ9NW38 375 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 BRWD3Q6RI45 1802 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 USP27XA6NNY8 438 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 ONECUT3O60422 494 aaPredicted RBP11.34□□□□□ -0.59
VPS53-206ENST00000570359 TPM4P67936 248 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 TPD52L1Q16890 204 aaPredicted RBP11.34□□□□□ -0.59
VPS53-206ENST00000570359 SLC27A3Q5K4L6 730 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 KIAA0825Q8IV33 1275 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 CEP131Q9UPN4 1083 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 UBR3Q6ZT12 1888 aa11.34□□□□□ -0.59
VPS53-206ENST00000570359 BBOX1O75936 387 aa11.33□□□□□ -0.59
VPS53-206ENST00000570359 BMP6P22004 513 aa11.33□□□□□ -0.59
VPS53-206ENST00000570359 CHRNA5P30532 468 aa11.33□□□□□ -0.59
VPS53-206ENST00000570359 SBK1Q52WX2 424 aa11.33□□□□□ -0.59
VPS53-206ENST00000570359 SMARCE1Q969G3 411 aa11.33□□□□□ -0.59
VPS53-206ENST00000570359 CEP95Q96GE4 821 aa11.33□□□□□ -0.59
VPS53-206ENST00000570359 DAGLAQ9Y4D2 1042 aa11.33□□□□□ -0.59
VPS53-206ENST00000570359 ZNF831Q5JPB2 1677 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 PP2D1A8MPX8 630 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 TMEM232C9JQI7 657 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 KLRF2D3W0D1 207 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 NPY5RQ15761 445 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 INF2Q27J81 1249 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 SLC35G1Q2M3R5 365 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 CERS5Q8N5B7 392 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 GPCPD1Q9NPB8 672 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.33□□□□□ -0.6
VPS53-206ENST00000570359 MKRN1Q9UHC7 482 aaKnown RBP11.33□□□□□ -0.6
VPS53-206ENST00000570359 MAN1B1Q9UKM7 699 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 MAPK8IP1Q9UQF2 711 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 CYTH3O43739 400 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 CAVIN2O95810 425 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 FGRP09769 529 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 SKILP12757 684 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 CDK11BP21127 795 aaKnown RBP11.33□□□□□ -0.6
VPS53-206ENST00000570359 FANCCQ00597 558 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 SHROOM1Q2M3G4 852 aaPredicted RBP11.33□□□□□ -0.6
VPS53-206ENST00000570359 WWC2Q6AWC2 1192 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 TMX4Q9H1E5 349 aaPredicted RBP11.33□□□□□ -0.6
VPS53-206ENST00000570359 DDX4Q9NQI0 724 aaKnown RBP11.33□□□□□ -0.6
VPS53-206ENST00000570359 MAD2L2Q9UI95 211 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 SRPRBQ9Y5M8 271 aaKnown RBP11.33□□□□□ -0.6
VPS53-206ENST00000570359 PARP3Q9Y6F1 533 aa11.33□□□□□ -0.6
VPS53-206ENST00000570359 SRCAPQ6ZRS2 3230 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 FMR1Q06787 632 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS53-206ENST00000570359 DHX8Q14562 1220 aaKnown RBP11.32□□□□□ -0.6
VPS53-206ENST00000570359 NCAPHQ15003 741 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 PFKFB3Q16875 520 aaPredicted RBP11.32□□□□□ -0.6
VPS53-206ENST00000570359 LRRC8AQ8IWT6 810 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 ZSCAN29Q8IWY8 852 aaPredicted RBP11.32□□□□□ -0.6
VPS53-206ENST00000570359 USP40Q9NVE5 1235 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 NID2Q14112 1375 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 PDS5AQ29RF7 1337 aaKnown RBP11.32□□□□□ -0.6
VPS53-206ENST00000570359 CCDC194A0A1B0GVG4 234 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 USP17L5A8MUK1 530 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 NAPAP54920 295 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 UBASH3AP57075 661 aa11.32□□□□□ -0.6
VPS53-206ENST00000570359 RHBDL3P58872 404 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms