RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 VCPKMTQ9H867 229 aa24.24■■□□□ 1.47
CLK3-225ENST00000569063 BIN2Q9UBW5 565 aaPredicted RBP24.24■■□□□ 1.47
CLK3-225ENST00000569063 CNMDO75829 334 aa24.23■■□□□ 1.47
CLK3-225ENST00000569063 COG2Q14746 738 aa24.23■■□□□ 1.47
CLK3-225ENST00000569063 PLEKHM2Q8IWE5 1019 aa24.23■■□□□ 1.47
CLK3-225ENST00000569063 ZNF287Q9HBT7 754 aa24.23■■□□□ 1.47
CLK3-225ENST00000569063 HELLSQ9NRZ9 838 aa24.23■■□□□ 1.47
CLK3-225ENST00000569063 SPDYE16A6NNV3 312 aaPredicted RBP24.22■■□□□ 1.47
CLK3-225ENST00000569063 ELNP15502 786 aa24.22■■□□□ 1.47
CLK3-225ENST00000569063 STK11IPQ8N1F8 1099 aa24.22■■□□□ 1.47
CLK3-225ENST00000569063 NAPBQ9H115 298 aa24.22■■□□□ 1.47
CLK3-225ENST00000569063 HOXC10Q9NYD6 342 aa24.22■■□□□ 1.47
CLK3-225ENST00000569063 FOXP2O15409 715 aa24.21■■□□□ 1.47
CLK3-225ENST00000569063 CCL5P13501 91 aa24.21■■□□□ 1.47
CLK3-225ENST00000569063 CCDC129Q6ZRS4 1044 aa24.21■■□□□ 1.47
CLK3-225ENST00000569063 TANGO6Q9C0B7 1094 aa24.21■■□□□ 1.47
CLK3-225ENST00000569063 PORCNQ9H237 461 aa24.21■■□□□ 1.47
CLK3-225ENST00000569063 DOCK3Q8IZD9 2030 aa24.21■■□□□ 1.47
CLK3-225ENST00000569063 INHAP05111 366 aa24.2■■□□□ 1.46
CLK3-225ENST00000569063 CCNA1P78396 465 aa24.2■■□□□ 1.46
CLK3-225ENST00000569063 CCAR1Q8IX12 1150 aaKnown RBP24.2■■□□□ 1.46
CLK3-225ENST00000569063 SOCS4Q8WXH5 440 aa24.2■■□□□ 1.46
CLK3-225ENST00000569063 BTBD7Q9P203 1132 aa24.2■■□□□ 1.46
CLK3-225ENST00000569063 GREB1LQ9C091 1923 aaPredicted RBP24.2■■□□□ 1.46
CLK3-225ENST00000569063 TRIM6-TRIM34B2RNG4 842 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 WDR46O15213 610 aaKnown RBP24.19■■□□□ 1.46
CLK3-225ENST00000569063 GJB1P08034 283 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 ATP2B2Q01814 1243 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 MCMDC2Q4G0Z9 681 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 GPR142Q7Z601 462 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 ZNF444Q8N0Y2 327 aaPredicted RBP24.19■■□□□ 1.46
CLK3-225ENST00000569063 SPICE1Q8N0Z3 855 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 NUDT12Q9BQG2 462 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 RNF208Q9H0X6 261 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 GOPCQ9HD26 462 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 NYAP2Q9P242 653 aa24.19■■□□□ 1.46
CLK3-225ENST00000569063 IGKV6D-41A0A0C4DH26 115 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 SLC3A2P08195 630 aaKnown RBP24.18■■□□□ 1.46
CLK3-225ENST00000569063 XRCC5P13010 732 aaKnown RBP24.18■■□□□ 1.46
CLK3-225ENST00000569063 PDE4BQ07343 736 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 PPARAQ07869 468 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 PLEKHH3Q7Z736 793 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 NKX2-3Q8TAU0 364 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 USP6NLQ92738 828 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 FAM227BQ96M60 508 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 UNC93B1Q9H1C4 597 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 PLXNB2O15031 1838 aa24.18■■□□□ 1.46
CLK3-225ENST00000569063 KIAA0100Q14667 2235 aaKnown RBP24.18■■□□□ 1.46
CLK3-225ENST00000569063 MKI67P46013 3256 aaKnown RBP24.17■■□□□ 1.46
CLK3-225ENST00000569063 A0A0D9SFI3 127 aa24.17■■□□□ 1.46
CLK3-225ENST00000569063 PRDM1O75626 825 aa24.17■■□□□ 1.46
CLK3-225ENST00000569063 GJA8P48165 433 aa24.17■■□□□ 1.46
CLK3-225ENST00000569063 IRX6P78412 446 aaPredicted RBP24.17■■□□□ 1.46
CLK3-225ENST00000569063 MORN1Q5T089 497 aa24.17■■□□□ 1.46
CLK3-225ENST00000569063 RILPL2Q969X0 211 aa24.17■■□□□ 1.46
CLK3-225ENST00000569063 HMGCRP04035 888 aa24.16■■□□□ 1.46
CLK3-225ENST00000569063 DSG3P32926 999 aa24.16■■□□□ 1.46
CLK3-225ENST00000569063 ALX1Q15699 326 aa24.16■■□□□ 1.46
CLK3-225ENST00000569063 VPS53Q5VIR6 699 aa24.16■■□□□ 1.46
CLK3-225ENST00000569063 MB21D1Q8N884 522 aa24.16■■□□□ 1.46
CLK3-225ENST00000569063 RLFQ13129 1914 aa24.16■■□□□ 1.46
CLK3-225ENST00000569063 FLOT1O75955 427 aa24.15■■□□□ 1.46
CLK3-225ENST00000569063 CYP2B6P20813 491 aa24.15■■□□□ 1.46
CLK3-225ENST00000569063 NMIQ13287 307 aaPredicted RBP24.15■■□□□ 1.46
CLK3-225ENST00000569063 SHISA4Q96DD7 197 aa24.15■■□□□ 1.46
CLK3-225ENST00000569063 ANAPC4Q9UJX5 808 aa24.15■■□□□ 1.46
CLK3-225ENST00000569063 SDSP20132 328 aa24.14■■□□□ 1.45
CLK3-225ENST00000569063 TRMT44Q8IYL2 757 aaKnown RBP24.14■■□□□ 1.45
CLK3-225ENST00000569063 NEDD1Q8NHV4 660 aa24.14■■□□□ 1.45
CLK3-225ENST00000569063 MKL1Q969V6 931 aa24.14■■□□□ 1.45
CLK3-225ENST00000569063 PAK6Q9NQU5 681 aaPredicted RBP24.14■■□□□ 1.45
CLK3-225ENST00000569063 MTMR4Q9NYA4 1195 aa24.14■■□□□ 1.45
CLK3-225ENST00000569063 SYNPO2Q9UMS6 1093 aa24.14■■□□□ 1.45
CLK3-225ENST00000569063 ADAMTS5Q9UNA0 930 aa24.14■■□□□ 1.45
CLK3-225ENST00000569063 PLIN4Q96Q06 1357 aa24.14■■□□□ 1.45
CLK3-225ENST00000569063 A0A0G2JMZ2 1700 aa24.13■■□□□ 1.45
CLK3-225ENST00000569063 CAPN2P17655 700 aa24.13■■□□□ 1.45
CLK3-225ENST00000569063 RGS2P41220 211 aa24.13■■□□□ 1.45
CLK3-225ENST00000569063 TRIB2Q92519 343 aa24.13■■□□□ 1.45
CLK3-225ENST00000569063 CEP95Q96GE4 821 aa24.13■■□□□ 1.45
CLK3-225ENST00000569063 SPATC1LQ9H0A9 340 aa24.13■■□□□ 1.45
CLK3-225ENST00000569063 CWC22Q9HCG8 908 aaKnown RBP24.13■■□□□ 1.45
CLK3-225ENST00000569063 CLIP2Q9UDT6 1046 aa24.13■■□□□ 1.45
CLK3-225ENST00000569063 SLC15A5A6NIM6 579 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 F5H6K3 240 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 SGPL1O95470 568 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 TSPY3P0CV98 308 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 TSPY8P0CW00 308 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 HSPD1P10809 573 aaKnown RBP24.12■■□□□ 1.45
CLK3-225ENST00000569063 PTPREP23469 700 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 TFAP4Q01664 338 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 KLRC3Q07444 240 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 ZNF589Q86UQ0 364 aaPredicted RBP24.12■■□□□ 1.45
CLK3-225ENST00000569063 SHCBP1Q8NEM2 672 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 U2AF1L4Q8WU68 220 aaKnown RBP24.12■■□□□ 1.45
CLK3-225ENST00000569063 ATG4CQ96DT6 458 aa24.12■■□□□ 1.45
CLK3-225ENST00000569063 MOV10L1Q9BXT6 1211 aaKnown RBP24.12■■□□□ 1.45
CLK3-225ENST00000569063 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.12■■□□□ 1.45
CLK3-225ENST00000569063 TTLL1O95922 423 aa24.11■■□□□ 1.45
CLK3-225ENST00000569063 FGAP02671 866 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms