RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PLXNA1Q9UIW2 1896 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 PQBP1O60828 265 aaKnown RBP8.96□□□□□ -0.98
VPS4A-203ENST00000564399 COBLO75128 1261 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 GNAI3P08754 354 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 ERCC3P19447 782 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 ITGB8P26012 769 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 PLA2G5P39877 138 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 USP5P45974 858 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 DYNLL1P63167 89 aaKnown RBP8.96□□□□□ -0.98
VPS4A-203ENST00000564399 PLS1Q14651 629 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 COG2Q14746 738 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 ABCB5Q2M3G0 1257 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 CERKLQ49MI3 558 aaPredicted RBP8.96□□□□□ -0.98
VPS4A-203ENST00000564399 C1orf53Q5VUE5 145 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 CCDC129Q6ZRS4 1044 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 IL27Q8NEV9 243 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 TIFAQ96CG3 184 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 API5Q9BZZ5 524 aaKnown RBP8.96□□□□□ -0.98
VPS4A-203ENST00000564399 XPNPEP3Q9NQH7 507 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 TMEM39AQ9NV64 488 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 HOXC10Q9NYD6 342 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 THEGQ9P2T0 379 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 SERPINB13Q9UIV8 391 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 ZNF521Q96K83 1311 aa8.96□□□□□ -0.98
VPS4A-203ENST00000564399 SPTBN5Q9NRC6 3674 aaKnown RBP8.95□□□□□ -0.98
VPS4A-203ENST00000564399 KIAA0355O15063 1070 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 IGHA2P01877 340 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 RARBP10826 455 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 CYP7A1P22680 504 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 CCDC158Q5M9N0 1113 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 TATDN1Q6P1N9 297 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 SAMD1Q6SPF0 538 aaPredicted RBP8.95□□□□□ -0.98
VPS4A-203ENST00000564399 RNF180Q86T96 592 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 TTC6Q86TZ1 520 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 NCAPG2Q86XI2 1143 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 SHCBP1Q8NEM2 672 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 ADAMTS19Q8TE59 1207 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 ATXN2LQ8WWM7 1075 aaKnown RBP8.95□□□□□ -0.98
VPS4A-203ENST00000564399 ASB2Q96Q27 587 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 TANGO6Q9C0B7 1094 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 SPATC1LQ9H0A9 340 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 PHF24Q9UPV7 400 aa8.95□□□□□ -0.98
VPS4A-203ENST00000564399 ZNF236Q9UL36 1845 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 DCDC2CA8MYV0 355 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 PGK1P00558 417 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 CYP2E1P05181 493 aaPredicted RBP8.94□□□□□ -0.98
VPS4A-203ENST00000564399 IGFBP4P22692 258 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 MRPS5P82675 430 aaKnown RBP8.94□□□□□ -0.98
VPS4A-203ENST00000564399 MTX1Q13505 466 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 CCDC85BQ15834 202 aaPredicted RBP8.94□□□□□ -0.98
VPS4A-203ENST00000564399 MIGA1Q8NAN2 632 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 SLC44A5Q8NCS7 719 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 UHRF1Q96T88 793 aaPredicted RBP8.94□□□□□ -0.98
VPS4A-203ENST00000564399 PRDM12Q9H4Q4 367 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 MROH8Q9H579 483 aa8.94□□□□□ -0.98
VPS4A-203ENST00000564399 A0A1W2PQ45 241 aaPredicted RBP8.93□□□□□ -0.98
VPS4A-203ENST00000564399 A0A1W2PQY0 241 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 MPHOSPH10O00566 681 aaKnown RBP8.93□□□□□ -0.98
VPS4A-203ENST00000564399 IDH1O75874 414 aaKnown RBP8.93□□□□□ -0.98
VPS4A-203ENST00000564399 FCER1AP12319 257 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 ZAP70P43403 619 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 SLFN5Q08AF3 891 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 MAP3K12Q12852 859 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 OS9Q13438 667 aaPredicted RBP8.93□□□□□ -0.98
VPS4A-203ENST00000564399 SEPT2Q15019 361 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 AKNAD1Q5T1N1 836 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 CCDC174Q6PII3 467 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 MB21D1Q8N884 522 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 MAML3Q96JK9 1138 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 DBNDD2Q9BQY9 259 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.93□□□□□ -0.986e-17■■■■□ 22.6
VPS4A-203ENST00000564399 EHD4Q9H223 541 aa8.93□□□□□ -0.98
VPS4A-203ENST00000564399 PIH1D3Q9NQM4 214 aaKnown RBP8.93□□□□□ -0.98
VPS4A-203ENST00000564399 CDH23Q9H251 3354 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 PIEZO1Q92508 2521 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 PRRC2BQ5JSZ5 2229 aaKnown RBP8.92□□□□□ -0.98
VPS4A-203ENST00000564399 MYH8P13535 1937 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 GRXCR1A8MXD5 290 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 IGSF3O75054 1194 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 FLOT1O75955 427 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 TIMP1P01033 207 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 POLR3DP05423 398 aaPredicted RBP8.92□□□□□ -0.98
VPS4A-203ENST00000564399 DSG3P32926 999 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 GUCY1A2P33402 732 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 SHMT1P34896 483 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 PBX2P40425 430 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 FAAP100Q0VG06 881 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 PPIGQ13427 754 aaKnown RBP eCLIP8.92□□□□□ -0.984e-7■□□□□ 11.3
VPS4A-203ENST00000564399 TNNI3KQ59H18 835 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 CERS3Q8IU89 383 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 ABRAQ8N0Z2 381 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 ATG4CQ96DT6 458 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 TOX2Q96NM4 488 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 PBX4Q9BYU1 374 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 STARD7Q9NQZ5 370 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 NRBP1Q9UHY1 535 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 MSRAQ9UJ68 235 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 FPGT-TNNI3KV9GXZ4 949 aa8.92□□□□□ -0.98
VPS4A-203ENST00000564399 COL11A1P12107 1806 aaPredicted RBP8.91□□□□□ -0.98
VPS4A-203ENST00000564399 PNMA6EA0A0J9YXQ4 647 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms