RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 MBD3O95983 291 aa20.89■□□□□ 0.93
COMMD4-208ENST00000563220 UBE2HP62256 183 aa20.89■□□□□ 0.93
COMMD4-208ENST00000563220 TPRNQ4KMQ1 711 aa20.89■□□□□ 0.93
COMMD4-208ENST00000563220 CAVIN1Q6NZI2 390 aaKnown RBP20.89■□□□□ 0.93
COMMD4-208ENST00000563220 SYT17Q9BSW7 474 aa20.89■□□□□ 0.93
COMMD4-208ENST00000563220 TRIM34Q9BYJ4 488 aa20.89■□□□□ 0.93
COMMD4-208ENST00000563220 RBM27Q9P2N5 1060 aaKnown RBP20.89■□□□□ 0.93
COMMD4-208ENST00000563220 CFAP45Q9UL16 551 aa20.89■□□□□ 0.93
COMMD4-208ENST00000563220 ELP1O95163 1332 aa20.89■□□□□ 0.93
COMMD4-208ENST00000563220 ZNF541Q9H0D2 1346 aa20.89■□□□□ 0.93
COMMD4-208ENST00000563220 TTLL1O95922 423 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 MMP1P03956 469 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 GOLGA8HP0CJ92 632 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 GNAQP50148 359 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 CEBPZQ03701 1054 aaKnown RBP20.88■□□□□ 0.93
COMMD4-208ENST00000563220 RBM26Q5T8P6 1007 aaKnown RBP20.88■□□□□ 0.93
COMMD4-208ENST00000563220 BRAPQ7Z569 592 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 DPF2Q92785 391 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 ZNF396Q96N95 335 aaPredicted RBP20.88■□□□□ 0.93
COMMD4-208ENST00000563220 MYO1BO43795 1136 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 VEGFAP15692 232 aaPredicted RBP20.88■□□□□ 0.93
COMMD4-208ENST00000563220 U2AF2P26368 475 aaKnown RBP eCLIP20.88■□□□□ 0.93
COMMD4-208ENST00000563220 MMP14P50281 582 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 MYSM1Q5VVJ2 828 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 ATL3Q6DD88 541 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 USP17L2Q6R6M4 530 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 MICALL2Q8IY33 904 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 LRRC47Q8N1G4 583 aaKnown RBP20.88■□□□□ 0.93
COMMD4-208ENST00000563220 PIBF1Q8WXW3 757 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 VPS54Q9P1Q0 977 aa20.88■□□□□ 0.93
COMMD4-208ENST00000563220 USP17L5A8MUK1 530 aa20.87■□□□□ 0.93
COMMD4-208ENST00000563220 CYTH3O43739 400 aa20.87■□□□□ 0.93
COMMD4-208ENST00000563220 RRP1BQ14684 758 aaKnown RBP20.87■□□□□ 0.93
COMMD4-208ENST00000563220 CDAN1Q8IWY9 1227 aa20.87■□□□□ 0.93
COMMD4-208ENST00000563220 TMEM39BQ9GZU3 492 aa20.87■□□□□ 0.93
COMMD4-208ENST00000563220 CNOT7Q9UIV1 285 aaKnown RBP20.87■□□□□ 0.93
COMMD4-208ENST00000563220 UTRNP46939 3433 aa20.87■□□□□ 0.93
COMMD4-208ENST00000563220 BTBD18B2RXH4 712 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 JAG1P78504 1218 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 SAMD7Q7Z3H4 446 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 FAM83AQ86UY5 434 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 TMEM63CQ9P1W3 806 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 PGAP2Q9UHJ9 254 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 RCOR1Q9UKL0 485 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 KLRF2D3W0D1 207 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 GDF11O95390 407 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 PARP1P09874 1014 aaKnown RBP20.86■□□□□ 0.93
COMMD4-208ENST00000563220 PDHBP11177 359 aa20.86■□□□□ 0.93
COMMD4-208ENST00000563220 DIS3L2Q8IYB7 885 aaKnown RBP20.86■□□□□ 0.93
COMMD4-208ENST00000563220 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.86■□□□□ 0.93
COMMD4-208ENST00000563220 LMNB1P20700 586 aa20.85■□□□□ 0.93
COMMD4-208ENST00000563220 PFKFB3Q16875 520 aaPredicted RBP20.85■□□□□ 0.93
COMMD4-208ENST00000563220 PGBD1Q96JS3 809 aa20.85■□□□□ 0.93
COMMD4-208ENST00000563220 PHF20Q9BVI0 1012 aa20.85■□□□□ 0.93
COMMD4-208ENST00000563220 CPVLQ9H3G5 476 aa20.85■□□□□ 0.93
COMMD4-208ENST00000563220 RTEL1Q9NZ71 1219 aa20.85■□□□□ 0.93
COMMD4-208ENST00000563220 HERC5Q9UII4 1024 aaKnown RBP20.85■□□□□ 0.93
COMMD4-208ENST00000563220 SCAF8Q9UPN6 1271 aaKnown RBP20.85■□□□□ 0.93
COMMD4-208ENST00000563220 SNHG28P0DPA3 235 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 SCG2P13521 617 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 ATP2B2Q01814 1243 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 GNL2Q13823 731 aaKnown RBP20.84■□□□□ 0.93
COMMD4-208ENST00000563220 SEPT2Q15019 361 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 SAFBQ15424 915 aaKnown RBP eCLIP20.84■□□□□ 0.93
COMMD4-208ENST00000563220 ABCB5Q2M3G0 1257 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 SIAH1Q8IUQ4 282 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 OXER1Q8TDS5 423 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 LZTS2Q9BRK4 669 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 CLIC4Q9Y696 253 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 XBP1P17861 261 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 TBC1D10BQ4KMP7 808 aaPredicted RBP20.84■□□□□ 0.93
COMMD4-208ENST00000563220 KANSL2Q9H9L4 492 aa20.84■□□□□ 0.93
COMMD4-208ENST00000563220 EEF2P13639 858 aaKnown RBP20.83■□□□□ 0.92
COMMD4-208ENST00000563220 NR5A1Q13285 461 aa20.83■□□□□ 0.92
COMMD4-208ENST00000563220 TMEM179Q6ZVK1 233 aa20.83■□□□□ 0.92
COMMD4-208ENST00000563220 NOSTRINQ8IVI9 506 aa20.83■□□□□ 0.92
COMMD4-208ENST00000563220 MKL1Q969V6 931 aa20.83■□□□□ 0.92
COMMD4-208ENST00000563220 FOXP1Q9H334 677 aaPredicted RBP20.83■□□□□ 0.92
COMMD4-208ENST00000563220 NYAP2Q9P242 653 aa20.83■□□□□ 0.92
COMMD4-208ENST00000563220 NPY5RQ15761 445 aa20.82■□□□□ 0.92
COMMD4-208ENST00000563220 PPP4R3BQ5MIZ7 849 aa20.82■□□□□ 0.92
COMMD4-208ENST00000563220 SPZ1Q9BXG8 430 aa20.82■□□□□ 0.92
COMMD4-208ENST00000563220 UBA5Q9GZZ9 404 aa20.82■□□□□ 0.92
COMMD4-208ENST00000563220 GREB1LQ9C091 1923 aaPredicted RBP20.82■□□□□ 0.92
COMMD4-208ENST00000563220 ASTN2O75129 1339 aaPredicted RBP20.82■□□□□ 0.92
COMMD4-208ENST00000563220 FRMPD2Q68DX3 1309 aaPredicted RBP20.82■□□□□ 0.92
COMMD4-208ENST00000563220 BAZ2BQ9UIF8 2168 aaKnown RBP20.82■□□□□ 0.92
COMMD4-208ENST00000563220 GH2P01242 217 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 YBX3P16989 372 aaKnown RBP eCLIP20.81■□□□□ 0.92
COMMD4-208ENST00000563220 RASA3Q14644 834 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 ZSCAN23Q3MJ62 389 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 LINC00301Q8NCQ3 95 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 POLR3EQ9NVU0 708 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 MYH8P13535 1937 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 TBC1D12O60347 775 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 SMARCA1P28370 1054 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 NASPP49321 788 aaPredicted RBP20.81■□□□□ 0.92
COMMD4-208ENST00000563220 MIGA2Q7L4E1 593 aa20.81■□□□□ 0.92
COMMD4-208ENST00000563220 ICA1Q05084 483 aa20.8■□□□□ 0.92
COMMD4-208ENST00000563220 KIF4BQ2VIQ3 1234 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms