RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 RASSF7Q02833 373 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 PFKFB3Q16875 520 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-233ENST00000557529 ZSCAN23Q3MJ62 389 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 FAM83AQ86UY5 434 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 DIS3L2Q8IYB7 885 aaKnown RBP14.41□□□□□ -0.1
SHMT2-233ENST00000557529 FAM177A1Q8N128 213 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-233ENST00000557529 DPF2Q92785 391 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 CSRNP1Q96S65 589 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 DNAJC18Q9H819 358 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 BRMS1Q9HCU9 246 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 MYOZ2Q9NPC6 264 aa14.41□□□□□ -0.1
SHMT2-233ENST00000557529 MYH15Q9Y2K3 1946 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 CLRN2A0PK11 232 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 TCP10L2B9ZVM9 353 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 DEKP35659 375 aaKnown RBP14.4□□□□□ -0.1
SHMT2-233ENST00000557529 NASPP49321 788 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-233ENST00000557529 ZNF445P59923 1031 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 ASPRV1Q53RT3 343 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 TMEM179Q6ZVK1 233 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 NOSTRINQ8IVI9 506 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 KCNG4Q8TDN1 519 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 SPZ1Q9BXG8 430 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 KANSL2Q9H9L4 492 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 SH3GLB2Q9NR46 395 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 TMEM63CQ9P1W3 806 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 CLIP2Q9UDT6 1046 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 KCNJ14Q9UNX9 436 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 MYH8P13535 1937 aa14.4□□□□□ -0.1
SHMT2-233ENST00000557529 GOLGA6L3A6NEY3 463 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 KLRF2D3W0D1 207 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 TNNI2P48788 182 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 CEBPZQ03701 1054 aaKnown RBP14.39□□□□□ -0.11
SHMT2-233ENST00000557529 CCDC183Q5T5S1 534 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 ANO1Q5XXA6 986 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 STAG2Q8N3U4 1231 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 PHF20Q9BVI0 1012 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 VEZTQ9HBM0 779 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 VPS54Q9P1Q0 977 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 NYAP2Q9P242 653 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 SIPA1L1O43166 1804 aa14.39□□□□□ -0.11
SHMT2-233ENST00000557529 GREB1LQ9C091 1923 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-233ENST00000557529 BTBD18B2RXH4 712 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 WNT10BO00744 389 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 LETM1O95202 739 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-233ENST00000557529 SNHG28P0DPA3 235 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 PDHBP11177 359 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 CALML3P27482 149 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 KRT2P35908 639 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 STK38Q15208 465 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 ABCB5Q2M3G0 1257 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 RILPL1Q5EBL4 403 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 L1TD1Q5T7N2 865 aaKnown RBP14.38□□□□□ -0.11
SHMT2-233ENST00000557529 RBM26Q5T8P6 1007 aaKnown RBP14.38□□□□□ -0.11
SHMT2-233ENST00000557529 LINC00301Q8NCQ3 95 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 MKL1Q969V6 931 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.38□□□□□ -0.11
SHMT2-233ENST00000557529 CABP5Q9NP86 173 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 CNTNAP1P78357 1384 aa14.38□□□□□ -0.11
SHMT2-233ENST00000557529 hCG_1642624A0A1W2PR95 340 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 FSD2A1L4K1 749 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 FAM196BA6NMK8 535 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 TBC1D12O60347 775 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 LMNB1P20700 586 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 ME1P48163 572 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 GMPSP49915 693 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-233ENST00000557529 TNFAIP1Q13829 316 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 SF3A1Q15459 793 aaKnown RBP14.37□□□□□ -0.11
SHMT2-233ENST00000557529 USP17L2Q6R6M4 530 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 ARHGAP27Q6ZUM4 889 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 LRRC47Q8N1G4 583 aaKnown RBP14.37□□□□□ -0.11
SHMT2-233ENST00000557529 JMYQ8N9B5 988 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 CCDC148Q8NFR7 591 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 BICD2Q8TD16 824 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 PGBD1Q96JS3 809 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 FTOQ9C0B1 505 aaKnown RBP eCLIP14.37□□□□□ -0.11
SHMT2-233ENST00000557529 FHDC1Q9C0D6 1143 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-233ENST00000557529 SYNPO2Q9UMS6 1093 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 MTMR7Q9Y216 660 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 GJA3Q9Y6H8 435 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 MYH6P13533 1939 aa14.37□□□□□ -0.11
SHMT2-233ENST00000557529 USP17L5A8MUK1 530 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 SPTLC2O15270 562 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 GOLGA8HP0CJ92 632 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 PRELPP51888 382 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 NLRP5P59047 1200 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 ATP2B2Q01814 1243 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 NBPF9Q3BBW0 867 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 GPATCH4Q5T3I0 446 aaKnown RBP14.36□□□□□ -0.11
SHMT2-233ENST00000557529 GALNT17Q6IS24 598 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 CCDC12Q8WUD4 166 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-233ENST00000557529 RRP36Q96EU6 259 aaKnown RBP14.36□□□□□ -0.11
SHMT2-233ENST00000557529 SEC63Q9UGP8 760 aaKnown RBP14.36□□□□□ -0.11
SHMT2-233ENST00000557529 CLIC4Q9Y696 253 aa14.36□□□□□ -0.11
SHMT2-233ENST00000557529 A0A1W2PQ27 194 aa14.35□□□□□ -0.11
SHMT2-233ENST00000557529 A0A1W2PQ64 194 aa14.35□□□□□ -0.11
SHMT2-233ENST00000557529 A0A1W2PQD8 194 aa14.35□□□□□ -0.11
SHMT2-233ENST00000557529 hCG_1984214I3L0E3 225 aa14.35□□□□□ -0.11
SHMT2-233ENST00000557529 CYTH3O43739 400 aa14.35□□□□□ -0.11
SHMT2-233ENST00000557529 EEF2P13639 858 aaKnown RBP14.35□□□□□ -0.11
SHMT2-233ENST00000557529 ICA1Q05084 483 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms