RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 STAP2Q9UGK3 403 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 DDX19BQ9UMR2 479 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 ZNFX1Q9P2E3 1918 aaKnown RBP12.78□□□□□ -0.36
SHMT2-215ENST00000554656 IFIT2P09913 472 aaKnown RBP12.78□□□□□ -0.36
SHMT2-215ENST00000554656 COL6A1P12109 1028 aa12.78□□□□□ -0.36
SHMT2-215ENST00000554656 ADD2P35612 726 aa12.78□□□□□ -0.36
SHMT2-215ENST00000554656 SIAH1Q8IUQ4 282 aa12.78□□□□□ -0.36
SHMT2-215ENST00000554656 DYNLL2Q96FJ2 89 aa12.78□□□□□ -0.36
SHMT2-215ENST00000554656 NBPF3Q9H094 633 aa12.78□□□□□ -0.36
SHMT2-215ENST00000554656 BOLA2Q9H3K6 86 aa12.78□□□□□ -0.36
SHMT2-215ENST00000554656 CABP5Q9NP86 173 aa12.78□□□□□ -0.36
SHMT2-215ENST00000554656 PAG1Q9NWQ8 432 aa12.78□□□□□ -0.36
SHMT2-215ENST00000554656 ZMYND8Q9ULU4 1186 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-215ENST00000554656 CYP2D7A0A087X1C5 515 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 HMMRO75330 724 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 MBD4O95243 580 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 IGHA2P01877 340 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 ATP5JP18859 108 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 PTPREP23469 700 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 GRB14Q14449 540 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 TRMT44Q8IYL2 757 aaKnown RBP12.77□□□□□ -0.37
SHMT2-215ENST00000554656 NPLOC4Q8TAT6 608 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 HAUS7Q99871 368 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 GDF15Q99988 308 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 C11orf49Q9H6J7 331 aa12.77□□□□□ -0.37
SHMT2-215ENST00000554656 A0A1W2PPC1 479 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 SLC15A5A6NIM6 579 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 RAB11FIP3O75154 756 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 HOXC6P09630 235 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 AKR1B1P15121 316 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 SYN1P17600 705 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 B4GALNT3Q6L9W6 998 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 CCAR1Q8IX12 1150 aaKnown RBP12.76□□□□□ -0.37
SHMT2-215ENST00000554656 TRPV1Q8NER1 839 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 LRCH3Q96II8 777 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 LTBP2Q14767 1821 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 PLXNA1Q9UIW2 1896 aa12.76□□□□□ -0.37
SHMT2-215ENST00000554656 MPHOSPH10O00566 681 aaKnown RBP12.75□□□□□ -0.37
SHMT2-215ENST00000554656 SMARCA5O60264 1052 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-215ENST00000554656 COL6A3P12111 3177 aa12.75□□□□□ -0.37
SHMT2-215ENST00000554656 CCNA1P78396 465 aa12.75□□□□□ -0.37
SHMT2-215ENST00000554656 LRRC26Q2I0M4 334 aa12.75□□□□□ -0.37
SHMT2-215ENST00000554656 WDR78Q5VTH9 848 aa12.75□□□□□ -0.37
SHMT2-215ENST00000554656 TMEM179Q6ZVK1 233 aa12.75□□□□□ -0.37
SHMT2-215ENST00000554656 MOV10L1Q9BXT6 1211 aaKnown RBP12.75□□□□□ -0.37
SHMT2-215ENST00000554656 BMP8BP34820 402 aa12.74□□□□□ -0.37
SHMT2-215ENST00000554656 MAGEA10P43363 369 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-215ENST00000554656 C12orf60Q5U649 245 aa12.74□□□□□ -0.37
SHMT2-215ENST00000554656 TANGO6Q9C0B7 1094 aa12.74□□□□□ -0.37
SHMT2-215ENST00000554656 CWC22Q9HCG8 908 aaKnown RBP12.74□□□□□ -0.37
SHMT2-215ENST00000554656 ATP8A2Q9NTI2 1148 aa12.74□□□□□ -0.37
SHMT2-215ENST00000554656 SWAP70Q9UH65 585 aa12.74□□□□□ -0.37
SHMT2-215ENST00000554656 MYH4Q9Y623 1939 aa12.74□□□□□ -0.37
SHMT2-215ENST00000554656 SMCHD1A6NHR9 2005 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 USP17L12C9JPN9 530 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 USP17L21D6R901 530 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 GLRX3O76003 335 aaKnown RBP12.73□□□□□ -0.37
SHMT2-215ENST00000554656 CYBAP13498 195 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 CYP2C19P33261 490 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 CDK8P49336 464 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 ICA1Q05084 483 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 COG2Q14746 738 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 C16orf86Q6ZW13 317 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 SPICE1Q8N0Z3 855 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 ATG4CQ96DT6 458 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 SPATC1LQ9H0A9 340 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 PUS7LQ9H0K6 701 aaKnown RBP12.73□□□□□ -0.37
SHMT2-215ENST00000554656 TMX2Q9Y320 296 aa12.73□□□□□ -0.37
SHMT2-215ENST00000554656 COBLO75128 1261 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 ERCC3P19447 782 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 ADORA2AP29274 412 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 DSG3P32926 999 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 UBE3CQ15386 1083 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 MFSD14CQ5VZR4 134 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 CENPQQ7L2Z9 268 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-215ENST00000554656 LRRCC1Q9C099 1032 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.72□□□□□ -0.371e-6■■□□□ 11.9
SHMT2-215ENST00000554656 VCPKMTQ9H867 229 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 DDX20Q9UHI6 824 aaKnown RBP12.72□□□□□ -0.37
SHMT2-215ENST00000554656 IVNS1ABPQ9Y6Y0 642 aa12.72□□□□□ -0.37
SHMT2-215ENST00000554656 ATP2B2Q01814 1243 aa12.71□□□□□ -0.37
SHMT2-215ENST00000554656 TSHZ3Q63HK5 1081 aa12.71□□□□□ -0.37
SHMT2-215ENST00000554656 CTR9Q6PD62 1173 aa12.71□□□□□ -0.37
SHMT2-215ENST00000554656 SHCBP1Q8NEM2 672 aa12.71□□□□□ -0.37
SHMT2-215ENST00000554656 LPAR1Q92633 364 aa12.71□□□□□ -0.37
SHMT2-215ENST00000554656 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.71□□□□□ -0.375e-8■■■□□ 18.8
SHMT2-215ENST00000554656 FBXO28Q9NVF7 368 aa12.71□□□□□ -0.37
SHMT2-215ENST00000554656 HOXC10Q9NYD6 342 aa12.71□□□□□ -0.37
SHMT2-215ENST00000554656 SLC4A4Q9Y6R1 1079 aa12.71□□□□□ -0.37
SHMT2-215ENST00000554656 LAMA2P24043 3122 aaKnown RBP12.71□□□□□ -0.38
SHMT2-215ENST00000554656 WDR46O15213 610 aaKnown RBP12.7□□□□□ -0.38
SHMT2-215ENST00000554656 FLOT1O75955 427 aa12.7□□□□□ -0.38
SHMT2-215ENST00000554656 EEF2P13639 858 aaKnown RBP12.7□□□□□ -0.38
SHMT2-215ENST00000554656 TMEM132BQ14DG7 1078 aa12.7□□□□□ -0.38
SHMT2-215ENST00000554656 OLFML2BQ68BL8 750 aa12.7□□□□□ -0.38
SHMT2-215ENST00000554656 MB21D1Q8N884 522 aa12.7□□□□□ -0.38
SHMT2-215ENST00000554656 CCDC17Q96LX7 622 aa12.7□□□□□ -0.38
SHMT2-215ENST00000554656 ARHGEF10LQ9HCE6 1279 aa12.7□□□□□ -0.38
SHMT2-215ENST00000554656 ADAMTS5Q9UNA0 930 aa12.7□□□□□ -0.38
SHMT2-215ENST00000554656 ROBO3Q96MS0 1386 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms