RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 RPAP3Q9H6T3 665 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-214ENST00000554604 SH2D4AQ9H788 454 aa14.79□□□□□ -0.04
SHMT2-214ENST00000554604 CWC22Q9HCG8 908 aaKnown RBP14.79□□□□□ -0.04
SHMT2-214ENST00000554604 TXNRD2Q9NNW7 524 aa14.79□□□□□ -0.04
SHMT2-214ENST00000554604 MYH4Q9Y623 1939 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 SALL3Q9BXA9 1300 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 A0A1W2PRG0 241 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 PEX10O60683 326 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 CCL5P13501 91 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 PDE1AP54750 535 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 MFAP1P55081 439 aaKnown RBP14.78□□□□□ -0.04
SHMT2-214ENST00000554604 ATP2B2Q01814 1243 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 BECN1Q14457 450 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 SBK1Q52WX2 424 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 CATSPERGQ6ZRH7 1159 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 CLEC10AQ8IUN9 316 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 STK11IPQ8N1F8 1099 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 PXYLP1Q8TE99 480 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 TANGO6Q9C0B7 1094 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 RNF208Q9H0X6 261 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 MKNK2Q9HBH9 465 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 RBPJLQ9UBG7 517 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 STAP2Q9UGK3 403 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 PLXNB2O15031 1838 aa14.78□□□□□ -0.04
SHMT2-214ENST00000554604 PATL2C9JE40 543 aaKnown RBP14.77□□□□□ -0.05
SHMT2-214ENST00000554604 MAPK4P31152 587 aa14.77□□□□□ -0.05
SHMT2-214ENST00000554604 RBM25P49756 843 aaKnown RBP14.77□□□□□ -0.05
SHMT2-214ENST00000554604 CCNA1P78396 465 aa14.77□□□□□ -0.05
SHMT2-214ENST00000554604 ZMYM1Q5SVZ6 1142 aa14.77□□□□□ -0.05
SHMT2-214ENST00000554604 NKX2-3Q8TAU0 364 aa14.77□□□□□ -0.05
SHMT2-214ENST00000554604 EVI5LQ96CN4 794 aa14.77□□□□□ -0.05
SHMT2-214ENST00000554604 SEC62Q99442 399 aaKnown RBP14.77□□□□□ -0.05
SHMT2-214ENST00000554604 KANSL2Q9H9L4 492 aa14.77□□□□□ -0.05
SHMT2-214ENST00000554604 ZNF287Q9HBT7 754 aa14.77□□□□□ -0.05
SHMT2-214ENST00000554604 RABGAP1Q9Y3P9 1069 aa14.77□□□□□ -0.05
SHMT2-214ENST00000554604 INHAP05111 366 aa14.76□□□□□ -0.05
SHMT2-214ENST00000554604 WDR78Q5VTH9 848 aa14.76□□□□□ -0.05
SHMT2-214ENST00000554604 SPICE1Q8N0Z3 855 aa14.76□□□□□ -0.05
SHMT2-214ENST00000554604 LPAR1Q92633 364 aa14.76□□□□□ -0.05
SHMT2-214ENST00000554604 NUDT12Q9BQG2 462 aa14.76□□□□□ -0.05
SHMT2-214ENST00000554604 EPB41L4AQ9HCS5 686 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-214ENST00000554604 TMX2Q9Y320 296 aa14.76□□□□□ -0.05
SHMT2-214ENST00000554604 RLFQ13129 1914 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 GREB1LQ9C091 1923 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-214ENST00000554604 RAD21O60216 631 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 GJB1P08034 283 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 EEF2P13639 858 aaKnown RBP14.75□□□□□ -0.05
SHMT2-214ENST00000554604 COG2Q14746 738 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 Q3C1V9 767 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 IFNL3Q8IZI9 196 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 SOCS4Q8WXH5 440 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 NAPBQ9H115 298 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 UNC93B1Q9H1C4 597 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 PORCNQ9H237 461 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 VCPKMTQ9H867 229 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 HOXC10Q9NYD6 342 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 GJD2Q9UKL4 321 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 PARP14Q460N5 1801 aa14.75□□□□□ -0.05
SHMT2-214ENST00000554604 ROBO3Q96MS0 1386 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 COL11A1P12107 1806 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-214ENST00000554604 SPDYE16A6NNV3 312 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-214ENST00000554604 TRIM6-TRIM34B2RNG4 842 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 HMGCRP04035 888 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 SLC3A2P08195 630 aaKnown RBP14.74□□□□□ -0.05
SHMT2-214ENST00000554604 CYP2B6P20813 491 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 RASA1P20936 1047 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 SAMD1Q6SPF0 538 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-214ENST00000554604 LBX2Q6XYB7 198 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 GPR142Q7Z601 462 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 PLEKHH3Q7Z736 793 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 SIAH1Q8IUQ4 282 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 ZNF444Q8N0Y2 327 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-214ENST00000554604 GOPCQ9HD26 462 aa14.74□□□□□ -0.05
SHMT2-214ENST00000554604 ZNFX1Q9P2E3 1918 aaKnown RBP14.74□□□□□ -0.05
SHMT2-214ENST00000554604 WDR46O15213 610 aaKnown RBP14.73□□□□□ -0.05
SHMT2-214ENST00000554604 FLOT1O75955 427 aa14.73□□□□□ -0.05
SHMT2-214ENST00000554604 GJA8P48165 433 aa14.73□□□□□ -0.05
SHMT2-214ENST00000554604 PDE4BQ07343 736 aa14.73□□□□□ -0.05
SHMT2-214ENST00000554604 KIAA1755Q5JYT7 1200 aa14.73□□□□□ -0.05
SHMT2-214ENST00000554604 POTEEQ6S8J3 1075 aa14.73□□□□□ -0.05
SHMT2-214ENST00000554604 CCDC129Q6ZRS4 1044 aa14.73□□□□□ -0.05
SHMT2-214ENST00000554604 IVNS1ABPQ9Y6Y0 642 aa14.73□□□□□ -0.05
SHMT2-214ENST00000554604 PRDM1O75626 825 aa14.72□□□□□ -0.05
SHMT2-214ENST00000554604 CNMDO75829 334 aa14.72□□□□□ -0.05
SHMT2-214ENST00000554604 XRCC5P13010 732 aaKnown RBP14.72□□□□□ -0.05
SHMT2-214ENST00000554604 SDSP20132 328 aa14.72□□□□□ -0.05
SHMT2-214ENST00000554604 RGS2P41220 211 aa14.72□□□□□ -0.05
SHMT2-214ENST00000554604 PRPF38BQ5VTL8 546 aaKnown RBP14.72□□□□□ -0.05
SHMT2-214ENST00000554604 CASC1Q6TDU7 716 aa14.72□□□□□ -0.05
SHMT2-214ENST00000554604 MB21D1Q8N884 522 aa14.72□□□□□ -0.05
SHMT2-214ENST00000554604 U2AF1L4Q8WU68 220 aaKnown RBP14.72□□□□□ -0.05
SHMT2-214ENST00000554604 RILPL2Q969X0 211 aa14.72□□□□□ -0.05
SHMT2-214ENST00000554604 BTBD7Q9P203 1132 aa14.72□□□□□ -0.05
SHMT2-214ENST00000554604 TFRCP02786 760 aaKnown RBP14.71□□□□□ -0.05
SHMT2-214ENST00000554604 ZKSCAN1P17029 563 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-214ENST00000554604 PPARAQ07869 468 aa14.71□□□□□ -0.05
SHMT2-214ENST00000554604 PLS1Q14651 629 aa14.71□□□□□ -0.05
SHMT2-214ENST00000554604 TICAM2Q86XR7 235 aa14.71□□□□□ -0.05
SHMT2-214ENST00000554604 TRMT44Q8IYL2 757 aaKnown RBP14.71□□□□□ -0.05
SHMT2-214ENST00000554604 SHISA4Q96DD7 197 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms