RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 FOXD4L3Q6VB84 417 aaPredicted RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 FAM89AQ96GI7 184 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 PNMA5Q96PV4 448 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 LRRCC1Q9C099 1032 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 BICC1Q9H694 974 aaKnown RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 NAGPAQ9UK23 515 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 BCS1LQ9Y276 419 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 USP42Q9H9J4 1324 aaKnown RBP6.16□□□□□ -1.42
VTI1B-202ENST00000553619 NUP188Q5SRE5 1749 aa6.16□□□□□ -1.42
VTI1B-202ENST00000553619 PNMA6EA0A0J9YXQ4 647 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 ANKRD18BA2A2Z9 1011 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 DYRK3O43781 588 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 EIF5BO60841 1220 aaKnown RBP6.15□□□□□ -1.42
VTI1B-202ENST00000553619 CSF1RP07333 972 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 RFX1P22670 979 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 IGFBP4P22692 258 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 GRNP28799 593 aaKnown RBP6.15□□□□□ -1.42
VTI1B-202ENST00000553619 CASP7P55210 303 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 FOXO4P98177 505 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 NUCB1Q02818 461 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 PTK7Q13308 1070 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 IFIT5Q13325 482 aaKnown RBP6.15□□□□□ -1.42
VTI1B-202ENST00000553619 CCDC152Q4G0S7 254 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 TBC1D9BQ66K14 1250 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 CHD1LQ86WJ1 897 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 NBPF5PQ86XG9 351 aaPredicted RBP6.15□□□□□ -1.42
VTI1B-202ENST00000553619 SIRT2Q8IXJ6 389 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 NUDT8Q8WV74 236 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 KIF1BPQ96EK5 621 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 NACC1Q96RE7 527 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 JPH1Q9HDC5 661 aaPredicted RBP6.15□□□□□ -1.42
VTI1B-202ENST00000553619 COPRSQ9NQ92 184 aa6.15□□□□□ -1.42
VTI1B-202ENST00000553619 DNAJB12Q9NXW2 375 aaKnown RBP6.15□□□□□ -1.42
VTI1B-202ENST00000553619 NOP58Q9Y2X3 529 aaKnown RBP6.15□□□□□ -1.42
VTI1B-202ENST00000553619 ANKRD36CQ5JPF3 1778 aa6.15□□□□□ -1.43
VTI1B-202ENST00000553619 A0A0A0MRY4 1105 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 FAM177BA6PVY3 158 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 TGFBR3LH3BV60 316 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 SERPINB2P05120 415 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 GYS1P13807 737 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 NFKB1P19838 968 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 TM4SF1P30408 202 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 ST5P78524 1137 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 RTN1Q16799 776 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 IER5Q5VY09 327 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 CLASRPQ8N2M8 674 aaKnown RBP6.14□□□□□ -1.43
VTI1B-202ENST00000553619 TTLL11Q8NHH1 800 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 FAM200AQ8TCP9 573 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 JARID2Q92833 1246 aaPredicted RBP6.14□□□□□ -1.43
VTI1B-202ENST00000553619 GSX2Q9BZM3 304 aa6.14□□□□□ -1.43
VTI1B-202ENST00000553619 SRP68Q9UHB9 627 aaKnown RBP6.14□□□□□ -1.43
VTI1B-202ENST00000553619 DMGDHQ9UI17 866 aaKnown RBP6.14□□□□□ -1.43
VTI1B-202ENST00000553619 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.14□□□□□ -1.43
VTI1B-202ENST00000553619 UBR3Q6ZT12 1888 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 CIAO1O76071 339 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 NTSR2O95665 410 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 SELPP16109 830 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 IGHMBP2P38935 993 aaKnown RBP6.13□□□□□ -1.43
VTI1B-202ENST00000553619 IL15P40933 162 aaPredicted RBP6.13□□□□□ -1.43
VTI1B-202ENST00000553619 CTSWP56202 376 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 MBTPS1Q14703 1052 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 NFIXQ14938 502 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 SF3B3Q15393 1217 aaKnown RBP6.13□□□□□ -1.43
VTI1B-202ENST00000553619 PSAPL1Q6NUJ1 521 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 SHISA2Q6UWI4 295 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 LDHAL6AQ6ZMR3 332 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 COL23A1Q86Y22 540 aaPredicted RBP6.13□□□□□ -1.43
VTI1B-202ENST00000553619 GPATCH3Q96I76 525 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 KAZALD1Q96I82 304 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 CDC5LQ99459 802 aaKnown RBP6.13□□□□□ -1.43
VTI1B-202ENST00000553619 MPHOSPH8Q99549 860 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 EFCC1Q9HA90 598 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 AKAP2Q9Y2D5 859 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 UBN2Q6ZU65 1347 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 CARMIL3Q8ND23 1372 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 TNS1Q9HBL0 1735 aaKnown RBP6.13□□□□□ -1.43
VTI1B-202ENST00000553619 BCORQ6W2J9 1755 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 MYH3P11055 1940 aa6.13□□□□□ -1.43
VTI1B-202ENST00000553619 EYA2O00167 538 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 ERC2O15083 957 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 IFIT2P09913 472 aaKnown RBP6.12□□□□□ -1.43
VTI1B-202ENST00000553619 HCLS1P14317 486 aaPredicted RBP6.12□□□□□ -1.43
VTI1B-202ENST00000553619 ELNP15502 786 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 PDE6BP35913 854 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 RGS3P49796 1198 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 AFF1P51825 1210 aaKnown RBP6.12□□□□□ -1.43
VTI1B-202ENST00000553619 PTPN12Q05209 780 aaKnown RBP6.12□□□□□ -1.43
VTI1B-202ENST00000553619 CCINQ13939 588 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 ADGRE1Q14246 886 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 ZNF827Q17R98 1081 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 EPHA10Q5JZY3 1008 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 PNPLA7Q6ZV29 1317 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 DDX46Q7L014 1031 aaKnown RBP6.12□□□□□ -1.43
VTI1B-202ENST00000553619 DEFB132Q7Z7B7 95 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 ANKRD18AQ8IVF6 992 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 CNBD1Q8NA66 436 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 RBM17Q96I25 401 aaKnown RBP6.12□□□□□ -1.43
VTI1B-202ENST00000553619 KRTAP4-8Q9BYQ9 185 aa6.12□□□□□ -1.43
VTI1B-202ENST00000553619 LNPKQ9C0E8 428 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms