RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PIGSQ96S52 555 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 TMEM47Q9BQJ4 181 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 EPC1Q9H2F5 836 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 DNAI1Q9UI46 699 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 FBXO2Q9UK22 296 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 CTNND2Q9UQB3 1225 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 GDAQ9Y2T3 454 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 FAM205AQ6ZU69 1335 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 PNPLA7Q6ZV29 1317 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 TOGARAM1Q9Y4F4 1720 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 XIRP1Q702N8 1843 aaKnown RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 USP17L5A8MUK1 530 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 URI1O94763 535 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 IDEP14735 1019 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 PTPREP23469 700 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 U2AF2P26368 475 aaKnown RBP eCLIP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 TXKP42681 527 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 CDK8P49336 464 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 DDR1Q08345 913 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 SPTY2D1Q68D10 685 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-215ENST00000552823 TTBK2Q6IQ55 1244 aa6.37□□□□□ -1.39
LIMA1-215ENST00000552823 ROBO1Q9Y6N7 1651 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 MMP10P09238 476 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 UBA7P41226 1012 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 TNNI2P48788 182 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 CUL4BQ13620 913 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 MTF1Q14872 753 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 TXNRD1Q16881 649 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 ATL3Q6DD88 541 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 SLC30A10Q6XR72 485 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 RBM43Q6ZSC3 357 aaKnown RBP6.36□□□□□ -1.39
LIMA1-215ENST00000552823 DYMQ7RTS9 669 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 WDR66Q8TBY9 1149 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 HINFPQ9BQA5 517 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 TMEM60Q9H2L4 133 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 LZTFL1Q9NQ48 299 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 USP40Q9NVE5 1235 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 TAB2Q9NYJ8 693 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 MYH2Q9UKX2 1941 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 XDHP47989 1333 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 TRIM49BA6NDI0 452 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 NRDCO43847 1150 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 CCNT1O60563 726 aaKnown RBP6.36□□□□□ -1.39
LIMA1-215ENST00000552823 TECP42680 631 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 NCAPHQ15003 741 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 UBE2SQ16763 222 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 CCDC178Q5BJE1 867 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 PPP4R3BQ5MIZ7 849 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 SOGA3Q5TF21 947 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 C12orf60Q5U649 245 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 ZFPM1Q8IX07 1006 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 SPICE1Q8N0Z3 855 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 CEP95Q96GE4 821 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 RBM17Q96I25 401 aaKnown RBP6.36□□□□□ -1.39
LIMA1-215ENST00000552823 IRX2Q9BZI1 471 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-215ENST00000552823 HOOK1Q9UJC3 728 aaKnown RBP6.36□□□□□ -1.39
LIMA1-215ENST00000552823 RTL9Q8NET4 1388 aa6.36□□□□□ -1.39
LIMA1-215ENST00000552823 SMCO2A6NFE2 343 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 PPP6R2O75170 966 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 GDF11O95390 407 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 LDHCP07864 332 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 CD44P16070 742 aaKnown RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 STAT6P42226 847 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 CACNB1Q02641 598 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 NFIAQ12857 509 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 RBM26Q5T8P6 1007 aaKnown RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 RCSD1Q6JBY9 416 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 KRT27Q7Z3Y8 459 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 BLIDQ8IZY5 108 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 TBC1D16Q8TBP0 767 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 NUP88Q99567 741 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 BRIP1Q9BX63 1249 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 RNF26Q9BY78 433 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 ATP8A2Q9NTI2 1148 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 TBC1D7Q9P0N9 293 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 BAZ2AQ9UIF9 1905 aaKnown RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 ZNF215Q9UL58 517 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 NUP98P52948 1817 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 PKD1L3Q7Z443 1732 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 PARP4Q9UKK3 1724 aaKnown RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 A0A0U1RQJ8 604 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 PRPF3O43395 683 aaKnown RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 TPM3P06753 285 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 AKR1B1P15121 316 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 KIF5BP33176 963 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 SLC10A5Q5PT55 438 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 WWC2Q6AWC2 1192 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 CCDC84Q86UT8 332 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 LRRN4CLQ8ND94 238 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 MYRIPQ8NFW9 859 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 ATRIPQ8WXE1 791 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 PAGE5Q96GU1 130 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 TRIM34Q9BYJ4 488 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 FOXP1Q9H334 677 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 CEP131Q9UPN4 1083 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 ITGB4P16144 1822 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 GLI3P10071 1580 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 N4BP3O15049 544 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 CYTH3O43739 400 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 PARP1P09874 1014 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms