RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 IRS2Q9Y4H2 1338 aa7.26□□□□□ -1.25
SYNE1-239ENST00000545694 GSG1L2A8MUP6 293 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 FOXP2O15409 715 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 BAG3O95817 575 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 IL1R1P14778 569 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 CPA1P15085 419 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 DEKP35659 375 aaKnown RBP7.25□□□□□ -1.25
SYNE1-239ENST00000545694 GYG1P46976 350 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 CCDC178Q5BJE1 867 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 AKNAD1Q5T1N1 836 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 PPP1R26Q5T8A7 1209 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-239ENST00000545694 MCTP1Q6DN14 999 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 MFSD6Q6ZSS7 791 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 SGMS1Q86VZ5 419 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 AMIGO3Q86WK7 504 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 GPR161Q8N6U8 529 aaKnown RBP7.25□□□□□ -1.25
SYNE1-239ENST00000545694 FAM184AQ8NB25 1140 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 LRRN4Q8WUT4 740 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 NSUN4Q96CB9 384 aaKnown RBP7.25□□□□□ -1.25
SYNE1-239ENST00000545694 CRNKL1Q9BZJ0 848 aaKnown RBP7.25□□□□□ -1.25
SYNE1-239ENST00000545694 LMBRD1Q9NUN5 540 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 ABCF2Q9UG63 623 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 ANGEL1Q9UNK9 670 aaKnown RBP7.25□□□□□ -1.25
SYNE1-239ENST00000545694 PARP3Q9Y6F1 533 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 SLC4A4Q9Y6R1 1079 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 DDX49Q9Y6V7 483 aaKnown RBP7.25□□□□□ -1.25
SYNE1-239ENST00000545694 LAMB1P07942 1786 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 MYH6P13533 1939 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 BAZ2AQ9UIF9 1905 aaKnown RBP7.25□□□□□ -1.25
SYNE1-239ENST00000545694 ELP1O95163 1332 aa7.25□□□□□ -1.25
SYNE1-239ENST00000545694 LTBP1Q14766 1721 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 NID2Q14112 1375 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 CCDC196A0A1B0GTZ2 297 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 ERICH2A1L162 156 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 TTLL8A6PVC2 850 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 PRC1O43663 620 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 LARGE1O95461 756 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 CHGBP05060 677 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 LDHBP07195 334 aaKnown RBP7.24□□□□□ -1.25
SYNE1-239ENST00000545694 FGRP09769 529 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 PDIA3P30101 505 aaKnown RBP7.24□□□□□ -1.25
SYNE1-239ENST00000545694 TDO2P48775 406 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 DDR1Q08345 913 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 SBK1Q52WX2 424 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 CC2D2BQ6DHV5 1058 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 SYNE3Q6ZMZ3 975 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 AMOTL1Q8IY63 956 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 ESR2Q92731 530 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 MASTLQ96GX5 879 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 RIOK1Q9BRS2 568 aaKnown RBP7.24□□□□□ -1.25
SYNE1-239ENST00000545694 NOL10Q9BSC4 688 aaKnown RBP7.24□□□□□ -1.25
SYNE1-239ENST00000545694 SCAND2PQ9GZW5 306 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-239ENST00000545694 MTMR6Q9Y217 621 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 ATP6V0A2Q9Y487 856 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 COL4A1P02462 1669 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 FAM205AQ6ZU69 1335 aa7.24□□□□□ -1.25
SYNE1-239ENST00000545694 DLEC1Q9Y238 1755 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 H3BQV1 296 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 SNAP23O00161 211 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 SH2B2O14492 632 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-239ENST00000545694 CPLX1O14810 134 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 LETM1O95202 739 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-239ENST00000545694 SRGNP10124 158 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 UBE2HP62256 183 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 KRT85P78386 507 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 PTSQ03393 145 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 ST3GAL1Q11201 340 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 SCRN1Q12765 414 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 PKP1Q13835 747 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.23□□□□□ -1.25
SYNE1-239ENST00000545694 TTLL5Q6EMB2 1281 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 STYK1Q6J9G0 422 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 COL23A1Q86Y22 540 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-239ENST00000545694 DZIP1Q86YF9 867 aaKnown RBP7.23□□□□□ -1.25
SYNE1-239ENST00000545694 LCORLQ8N3X6 602 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 FBXO41Q8TF61 875 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 WASF1Q92558 559 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 EYA3Q99504 573 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 ARHGAP9Q9BRR9 750 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 COA1Q9GZY4 146 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 ARMT1Q9H993 441 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 ZNF287Q9HBT7 754 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 ARPP21Q9UBL0 812 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-239ENST00000545694 CFAP45Q9UL16 551 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 TAF6LQ9Y6J9 622 aa7.23□□□□□ -1.25
SYNE1-239ENST00000545694 COL1A1P02452 1464 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-239ENST00000545694 FOCADQ5VW36 1801 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 CDK5RAP2Q96SN8 1893 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 GOLGA6L3A6NEY3 463 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 ORC4O43929 436 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 PRPF40AO75400 957 aaKnown RBP7.22□□□□□ -1.25
SYNE1-239ENST00000545694 UFL1O94874 794 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 CALM1P0DP23 149 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 CALM2P0DP24 149 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 CALM3P0DP25 149 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 MRE11P49959 708 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 ZNF445P59923 1031 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 HAND2P61296 217 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 FKBP1AP62942 108 aaKnown RBP7.22□□□□□ -1.25
SYNE1-239ENST00000545694 KRT76Q01546 638 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms