RNA–Protein interactions for RNA: ENST00000543590.1

VPS37B-204, Transcript of VPS37B, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS37B, Length 1,457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS37B-204ENST00000543590 SH2D4AQ9H788 454 aa17.07■□□□□ 0.32
VPS37B-204ENST00000543590 MKNK2Q9HBH9 465 aa17.07■□□□□ 0.32
VPS37B-204ENST00000543590 SPDYE16A6NNV3 312 aaPredicted RBP17.06■□□□□ 0.32
VPS37B-204ENST00000543590 INHAP05111 366 aa17.06■□□□□ 0.32
VPS37B-204ENST00000543590 COG2Q14746 738 aa17.06■□□□□ 0.32
VPS37B-204ENST00000543590 CCAR1Q8IX12 1150 aaKnown RBP17.06■□□□□ 0.32
VPS37B-204ENST00000543590 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.06■□□□□ 0.32
VPS37B-204ENST00000543590 TANGO6Q9C0B7 1094 aa17.06■□□□□ 0.32
VPS37B-204ENST00000543590 RNF208Q9H0X6 261 aa17.06■□□□□ 0.32
VPS37B-204ENST00000543590 VCPKMTQ9H867 229 aa17.06■□□□□ 0.32
VPS37B-204ENST00000543590 GJB1P08034 283 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 ATP2B2Q01814 1243 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 CCDC129Q6ZRS4 1044 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 SPICE1Q8N0Z3 855 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 UNC93B1Q9H1C4 597 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 HOXC10Q9NYD6 342 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 BTBD7Q9P203 1132 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 PDE4DIPQ5VU43 2346 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 CCNA1P78396 465 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 GPR142Q7Z601 462 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 PLEKHM2Q8IWE5 1019 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 NUDT12Q9BQG2 462 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 NAPBQ9H115 298 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 ZNF287Q9HBT7 754 aa17.05■□□□□ 0.32
VPS37B-204ENST00000543590 PLXNB2O15031 1838 aa17.04■□□□□ 0.32
VPS37B-204ENST00000543590 CENPFP49454 3210 aa17.04■□□□□ 0.32
VPS37B-204ENST00000543590 FOXP2O15409 715 aa17.04■□□□□ 0.32
VPS37B-204ENST00000543590 CYP2B6P20813 491 aa17.04■□□□□ 0.32
VPS37B-204ENST00000543590 PLEKHH3Q7Z736 793 aa17.04■□□□□ 0.32
VPS37B-204ENST00000543590 TICAM2Q86XR7 235 aa17.04■□□□□ 0.32
VPS37B-204ENST00000543590 SOCS4Q8WXH5 440 aa17.04■□□□□ 0.32
VPS37B-204ENST00000543590 HELLSQ9NRZ9 838 aa17.04■□□□□ 0.32
VPS37B-204ENST00000543590 TNRC18O15417 2968 aaPredicted RBP17.03■□□□□ 0.32
VPS37B-204ENST00000543590 WDR46O15213 610 aaKnown RBP17.03■□□□□ 0.32
VPS37B-204ENST00000543590 PRDM1O75626 825 aa17.03■□□□□ 0.32
VPS37B-204ENST00000543590 GJA8P48165 433 aa17.03■□□□□ 0.32
VPS37B-204ENST00000543590 IRX6P78412 446 aaPredicted RBP17.03■□□□□ 0.32
VPS37B-204ENST00000543590 ZNF444Q8N0Y2 327 aaPredicted RBP17.03■□□□□ 0.32
VPS37B-204ENST00000543590 NKX2-3Q8TAU0 364 aa17.03■□□□□ 0.32
VPS37B-204ENST00000543590 SHISA4Q96DD7 197 aa17.03■□□□□ 0.32
VPS37B-204ENST00000543590 FAM227BQ96M60 508 aa17.03■□□□□ 0.32
VPS37B-204ENST00000543590 OSBPL3Q9H4L5 887 aa17.03■□□□□ 0.32
VPS37B-204ENST00000543590 GOPCQ9HD26 462 aa17.03■□□□□ 0.32
VPS37B-204ENST00000543590 GREB1LQ9C091 1923 aaPredicted RBP17.03■□□□□ 0.32
VPS37B-204ENST00000543590 A0A0D9SFI3 127 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 TRIM6-TRIM34B2RNG4 842 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 FLOT1O75955 427 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 HMGCRP04035 888 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 XRCC5P13010 732 aaKnown RBP17.02■□□□□ 0.32
VPS37B-204ENST00000543590 DSG3P32926 999 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 PPARAQ07869 468 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 MORN1Q5T089 497 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 VPS53Q5VIR6 699 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 USP6NLQ92738 828 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 RILPL2Q969X0 211 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 CWC22Q9HCG8 908 aaKnown RBP17.02■□□□□ 0.32
VPS37B-204ENST00000543590 NYAP2Q9P242 653 aa17.02■□□□□ 0.32
VPS37B-204ENST00000543590 RLFQ13129 1914 aa17.02■□□□□ 0.31
VPS37B-204ENST00000543590 IGKV6D-41A0A0C4DH26 115 aa17.01■□□□□ 0.31
VPS37B-204ENST00000543590 SLC3A2P08195 630 aaKnown RBP17.01■□□□□ 0.31
VPS37B-204ENST00000543590 PDE4BQ07343 736 aa17.01■□□□□ 0.31
VPS37B-204ENST00000543590 MCMDC2Q4G0Z9 681 aa17.01■□□□□ 0.31
VPS37B-204ENST00000543590 WDR78Q5VTH9 848 aa17.01■□□□□ 0.31
VPS37B-204ENST00000543590 U2AF1L4Q8WU68 220 aaKnown RBP17.01■□□□□ 0.31
VPS37B-204ENST00000543590 TRIB2Q92519 343 aa17.01■□□□□ 0.31
VPS37B-204ENST00000543590 RAD21O60216 631 aa17■□□□□ 0.31
VPS37B-204ENST00000543590 RGS2P41220 211 aa17■□□□□ 0.31
VPS37B-204ENST00000543590 TRIM32Q13049 653 aa17■□□□□ 0.31
VPS37B-204ENST00000543590 NMIQ13287 307 aaPredicted RBP17■□□□□ 0.31
VPS37B-204ENST00000543590 MB21D1Q8N884 522 aa17■□□□□ 0.31
VPS37B-204ENST00000543590 ATG4CQ96DT6 458 aa17■□□□□ 0.31
VPS37B-204ENST00000543590 MOV10L1Q9BXT6 1211 aaKnown RBP17■□□□□ 0.31
VPS37B-204ENST00000543590 PAK6Q9NQU5 681 aaPredicted RBP17■□□□□ 0.31
VPS37B-204ENST00000543590 CLIP2Q9UDT6 1046 aa17■□□□□ 0.31
VPS37B-204ENST00000543590 SLC15A5A6NIM6 579 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 SGPL1O95470 568 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 PTPREP23469 700 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 MAP2K5Q13163 448 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 ALX1Q15699 326 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 FAM83BQ5T0W9 1011 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 PRPF38BQ5VTL8 546 aaKnown RBP16.99■□□□□ 0.31
VPS37B-204ENST00000543590 SAMD1Q6SPF0 538 aaPredicted RBP16.99■□□□□ 0.31
VPS37B-204ENST00000543590 TRMT44Q8IYL2 757 aaKnown RBP16.99■□□□□ 0.31
VPS37B-204ENST00000543590 CEP95Q96GE4 821 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 DEFB118Q96PH6 123 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 SPATC1LQ9H0A9 340 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 FBXO28Q9NVF7 368 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 MTMR4Q9NYA4 1195 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 IVNS1ABPQ9Y6Y0 642 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 F5H6K3 240 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 SDSP20132 328 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 CTDSPL2Q05D32 466 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 KLRC3Q07444 240 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 CCL14Q16627 93 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 FAM47AQ5JRC9 791 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 NEDD1Q8NHV4 660 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 APBA2Q99767 749 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.99■□□□□ 0.31
VPS37B-204ENST00000543590 ANAPC4Q9UJX5 808 aa16.99■□□□□ 0.31
VPS37B-204ENST00000543590 ADAMTS5Q9UNA0 930 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms