RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 STRNO43815 780 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 RLBP1P12271 317 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 USP5P45974 858 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 SHHQ15465 462 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 GJC2Q5T442 439 aaPredicted RBP8.9□□□□□ -0.98
YBX3-209ENST00000540747 SLC39A5Q6ZMH5 540 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 ABRAQ8N0Z2 381 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 FRAT1Q92837 279 aaPredicted RBP8.9□□□□□ -0.98
YBX3-209ENST00000540747 CDX2Q99626 313 aaPredicted RBP8.9□□□□□ -0.98
YBX3-209ENST00000540747 LBHD1Q9BQE6 289 aaPredicted RBP8.9□□□□□ -0.98
YBX3-209ENST00000540747 SPATC1LQ9H0A9 340 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 CCDC8Q9H0W5 538 aaPredicted RBP8.9□□□□□ -0.98
YBX3-209ENST00000540747 TTYH1Q9H313 450 aaPredicted RBP8.9□□□□□ -0.98
YBX3-209ENST00000540747 C1orf115Q9H7X2 142 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 IVNS1ABPQ9Y6Y0 642 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 BDP1A6H8Y1 2624 aa8.9□□□□□ -0.98
YBX3-209ENST00000540747 NCOR1O75376 2440 aa8.9□□□□□ -0.99
YBX3-209ENST00000540747 NAV1Q8NEY1 1877 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 TCRBV5S4A2TA0A5A2 114 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 TRIM43BA6NCK2 446 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 CCER2I3L3R5 266 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 ERCC3P19447 782 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 CNGA1P29973 690 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 SMAD3P84022 425 aaKnown RBP8.89□□□□□ -0.99
YBX3-209ENST00000540747 MAP3K12Q12852 859 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 OS9Q13438 667 aaPredicted RBP8.89□□□□□ -0.99
YBX3-209ENST00000540747 COG2Q14746 738 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 LRRC41Q15345 812 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 TRIM60Q495X7 471 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 ZNF697Q5TEC3 545 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 WDR78Q5VTH9 848 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 ZKSCAN2Q63HK3 967 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 SH3RF1Q7Z6J0 888 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 MB21D1Q8N884 522 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 ARRDC4Q8NCT1 418 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 TRIM43Q96BQ3 446 aaPredicted RBP8.89□□□□□ -0.99
YBX3-209ENST00000540747 SEMA6BQ9H3T3 888 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 CWC22Q9HCG8 908 aaKnown RBP8.89□□□□□ -0.99
YBX3-209ENST00000540747 CABP5Q9NP86 173 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 HOXC10Q9NYD6 342 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 NRBP1Q9UHY1 535 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 ADAMTS5Q9UNA0 930 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 PHF24Q9UPV7 400 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 ATP11BQ9Y2G3 1177 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 CHD7Q9P2D1 2997 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 PARP14Q460N5 1801 aa8.89□□□□□ -0.99
YBX3-209ENST00000540747 PDE6AP16499 860 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 ITGB8P26012 769 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 DSG3P32926 999 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 FAM47AQ5JRC9 791 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 CEP85Q6P2H3 762 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 SLC44A5Q8NCS7 719 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 BADQ92934 168 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 ATG4CQ96DT6 458 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 MAML3Q96JK9 1138 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 FAM161BQ96MY7 647 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 MROH8Q9H579 483 aa8.88□□□□□ -0.99
YBX3-209ENST00000540747 DCP1AQ9NPI6 582 aaPredicted RBP8.88□□□□□ -0.99
YBX3-209ENST00000540747 TMEM265A0A087WTH1 108 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 MAGEB6P1A0A0J9YX57 407 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 KBTBD13C9JR72 458 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 CYP2D6P10635 497 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 ADCYAP1R1P41586 468 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 EPHB4P54760 987 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 TLE2Q04725 743 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 PRAMEF19Q5SWL8 479 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 ANO1Q5XXA6 986 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 TMEM179Q6ZVK1 233 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 DPP9Q86TI2 863 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 CLEC10AQ8IUN9 316 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 REPS2Q8NFH8 660 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 MAFAQ8NHW3 353 aaPredicted RBP8.87□□□□□ -0.99
YBX3-209ENST00000540747 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.87□□□□□ -0.99
YBX3-209ENST00000540747 PRKAG2Q9UGJ0 569 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 TMX2Q9Y320 296 aa8.87□□□□□ -0.99
YBX3-209ENST00000540747 SMIM22K7EJ46 135 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 KIAA0355O15063 1070 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 ADAMTS4O75173 837 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 POLR3DP05423 398 aaPredicted RBP8.86□□□□□ -0.99
YBX3-209ENST00000540747 ZNF865P0CJ78 1059 aaPredicted RBP8.86□□□□□ -0.99
YBX3-209ENST00000540747 AKR1B1P15121 316 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 TMEM132BQ14DG7 1078 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 ZNF792Q3KQV3 632 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 SLC9C2Q5TAH2 1124 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 AACSQ86V21 672 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 LCORLQ8N3X6 602 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 SDR42E1Q8WUS8 393 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 MYLIPQ8WY64 445 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 CRNKL1Q9BZJ0 848 aaKnown RBP8.86□□□□□ -0.99
YBX3-209ENST00000540747 TANGO6Q9C0B7 1094 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 VCPKMTQ9H867 229 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 MCM9Q9NXL9 1143 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 SWAP70Q9UH65 585 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 EXOC6BQ9Y2D4 811 aa8.86□□□□□ -0.99
YBX3-209ENST00000540747 ZBED9Q6R2W3 1325 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 ZNF532Q9HCE3 1301 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 SMCHD1A6NHR9 2005 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 WDR46O15213 610 aaKnown RBP8.85□□□□□ -0.99
YBX3-209ENST00000540747 FLOT1O75955 427 aa8.85□□□□□ -0.99
YBX3-209ENST00000540747 SLC25A27O95847 323 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms