RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 GJD2Q9UKL4 321 aa22.66■■□□□ 1.22
CLIP1-211ENST00000539080 DOCK3Q8IZD9 2030 aa22.65■■□□□ 1.22
CLIP1-211ENST00000539080 SPDYE16A6NNV3 312 aaPredicted RBP22.65■■□□□ 1.22
CLIP1-211ENST00000539080 TRIM6-TRIM34B2RNG4 842 aa22.65■■□□□ 1.22
CLIP1-211ENST00000539080 PDE4BQ07343 736 aa22.65■■□□□ 1.22
CLIP1-211ENST00000539080 Q3C1V9 767 aa22.65■■□□□ 1.22
CLIP1-211ENST00000539080 CLEC10AQ8IUN9 316 aa22.65■■□□□ 1.22
CLIP1-211ENST00000539080 CCAR1Q8IX12 1150 aaKnown RBP22.65■■□□□ 1.22
CLIP1-211ENST00000539080 SOCS4Q8WXH5 440 aa22.65■■□□□ 1.22
CLIP1-211ENST00000539080 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.65■■□□□ 1.22
CLIP1-211ENST00000539080 PLXNB2O15031 1838 aa22.65■■□□□ 1.22
CLIP1-211ENST00000539080 WDR46O15213 610 aaKnown RBP22.64■■□□□ 1.21
CLIP1-211ENST00000539080 CNMDO75829 334 aa22.64■■□□□ 1.21
CLIP1-211ENST00000539080 EN2P19622 333 aaPredicted RBP22.64■■□□□ 1.21
CLIP1-211ENST00000539080 MTFR1Q15390 333 aa22.64■■□□□ 1.21
CLIP1-211ENST00000539080 ZNF444Q8N0Y2 327 aaPredicted RBP22.64■■□□□ 1.21
CLIP1-211ENST00000539080 NKX2-3Q8TAU0 364 aa22.64■■□□□ 1.21
CLIP1-211ENST00000539080 NUDT12Q9BQG2 462 aa22.64■■□□□ 1.21
CLIP1-211ENST00000539080 TANGO6Q9C0B7 1094 aa22.64■■□□□ 1.21
CLIP1-211ENST00000539080 GOPCQ9HD26 462 aa22.64■■□□□ 1.21
CLIP1-211ENST00000539080 A0A0G2JMZ2 1700 aa22.64■■□□□ 1.21
CLIP1-211ENST00000539080 RLFQ13129 1914 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 PEX10O60683 326 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 MYCP01106 439 aaPredicted RBP22.63■■□□□ 1.21
CLIP1-211ENST00000539080 CCL5P13501 91 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 PPARAQ07869 468 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 MCMDC2Q4G0Z9 681 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 KIAA1755Q5JYT7 1200 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 CCDC129Q6ZRS4 1044 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 MB21D1Q8N884 522 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 NYAP2Q9P242 653 aa22.63■■□□□ 1.21
CLIP1-211ENST00000539080 TNRC18O15417 2968 aaPredicted RBP22.63■■□□□ 1.21
CLIP1-211ENST00000539080 FOXP2O15409 715 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 INHAP05111 366 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 GJB1P08034 283 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 ELNP15502 786 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 CAPN2P17655 700 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 ATP2B2Q01814 1243 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 GPR142Q7Z601 462 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 PLEKHH3Q7Z736 793 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 STK11IPQ8N1F8 1099 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 RILPL2Q969X0 211 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 PORCNQ9H237 461 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 SYNPO2Q9UMS6 1093 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 PLIN4Q96Q06 1357 aa22.62■■□□□ 1.21
CLIP1-211ENST00000539080 PARP14Q460N5 1801 aa22.61■■□□□ 1.21
CLIP1-211ENST00000539080 IGKV6D-41A0A0C4DH26 115 aa22.61■■□□□ 1.21
CLIP1-211ENST00000539080 XRCC5P13010 732 aaKnown RBP22.61■■□□□ 1.21
CLIP1-211ENST00000539080 DSG3P32926 999 aa22.61■■□□□ 1.21
CLIP1-211ENST00000539080 ALX1Q15699 326 aa22.61■■□□□ 1.21
CLIP1-211ENST00000539080 TRMT44Q8IYL2 757 aaKnown RBP22.61■■□□□ 1.21
CLIP1-211ENST00000539080 SPICE1Q8N0Z3 855 aa22.61■■□□□ 1.21
CLIP1-211ENST00000539080 FAM227BQ96M60 508 aa22.61■■□□□ 1.21
CLIP1-211ENST00000539080 RNF208Q9H0X6 261 aa22.61■■□□□ 1.21
CLIP1-211ENST00000539080 BTBD7Q9P203 1132 aa22.61■■□□□ 1.21
CLIP1-211ENST00000539080 KIAA0100Q14667 2235 aaKnown RBP22.6■■□□□ 1.21
CLIP1-211ENST00000539080 A0A0D9SFI3 127 aa22.6■■□□□ 1.21
CLIP1-211ENST00000539080 PRDM1O75626 825 aa22.6■■□□□ 1.21
CLIP1-211ENST00000539080 FLOT1O75955 427 aa22.6■■□□□ 1.21
CLIP1-211ENST00000539080 HMGCRP04035 888 aa22.6■■□□□ 1.21
CLIP1-211ENST00000539080 MORN1Q5T089 497 aa22.6■■□□□ 1.21
CLIP1-211ENST00000539080 CWC22Q9HCG8 908 aaKnown RBP22.6■■□□□ 1.21
CLIP1-211ENST00000539080 ANAPC4Q9UJX5 808 aa22.6■■□□□ 1.21
CLIP1-211ENST00000539080 ZMYM6O95789 1325 aa22.59■■□□□ 1.21
CLIP1-211ENST00000539080 RGS2P41220 211 aa22.59■■□□□ 1.21
CLIP1-211ENST00000539080 GJA8P48165 433 aa22.59■■□□□ 1.21
CLIP1-211ENST00000539080 MFAP1P55081 439 aaKnown RBP22.59■■□□□ 1.21
CLIP1-211ENST00000539080 NMIQ13287 307 aaPredicted RBP22.59■■□□□ 1.21
CLIP1-211ENST00000539080 VPS53Q5VIR6 699 aa22.59■■□□□ 1.21
CLIP1-211ENST00000539080 NEDD1Q8NHV4 660 aa22.59■■□□□ 1.21
CLIP1-211ENST00000539080 USP6NLQ92738 828 aa22.59■■□□□ 1.21
CLIP1-211ENST00000539080 BRCA2P51587 3418 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 TSPY3P0CV98 308 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 TSPY8P0CW00 308 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 SDSP20132 328 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 IRX6P78412 446 aaPredicted RBP22.58■■□□□ 1.21
CLIP1-211ENST00000539080 PPP4R3BQ5MIZ7 849 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 MKL1Q969V6 931 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 UNC93B1Q9H1C4 597 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 MTMR4Q9NYA4 1195 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 MYH4Q9Y623 1939 aa22.58■■□□□ 1.21
CLIP1-211ENST00000539080 CCDC171Q6TFL3 1326 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 SLC15A5A6NIM6 579 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 HIP1O00291 1037 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 TTLL1O95922 423 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 CYP2B6P20813 491 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 SHCBP1Q8NEM2 672 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 CEP95Q96GE4 821 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 APBA2Q99767 749 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 SPATC1LQ9H0A9 340 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 PAK6Q9NQU5 681 aaPredicted RBP22.57■■□□□ 1.2
CLIP1-211ENST00000539080 CLIP2Q9UDT6 1046 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 ADAMTS5Q9UNA0 930 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.57■■□□□ 1.2
CLIP1-211ENST00000539080 IVNS1ABPQ9Y6Y0 642 aa22.57■■□□□ 1.2
CLIP1-211ENST00000539080 F5H6K3 240 aa22.56■■□□□ 1.2
CLIP1-211ENST00000539080 HSPD1P10809 573 aaKnown RBP22.56■■□□□ 1.2
CLIP1-211ENST00000539080 PTPREP23469 700 aa22.56■■□□□ 1.2
CLIP1-211ENST00000539080 KLRC3Q07444 240 aa22.56■■□□□ 1.2
CLIP1-211ENST00000539080 MAP2K5Q13163 448 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms