RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SPDYE4A6NLX3 237 aa24.15■■□□□ 1.46
VPS28-205ENST00000526204 ZPR1O75312 459 aa24.15■■□□□ 1.46
VPS28-205ENST00000526204 FAM47AQ5JRC9 791 aa24.15■■□□□ 1.46
VPS28-205ENST00000526204 TRIM65Q6PJ69 517 aa24.15■■□□□ 1.46
VPS28-205ENST00000526204 TC2NQ8N9U0 490 aa24.15■■□□□ 1.46
VPS28-205ENST00000526204 SRRTQ9BXP5 876 aaKnown RBP24.15■■□□□ 1.46
VPS28-205ENST00000526204 DNAI1Q9UI46 699 aa24.15■■□□□ 1.46
VPS28-205ENST00000526204 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.15■■□□□ 1.468e-7■■□□□ 13.6
VPS28-205ENST00000526204 NMT2O60551 498 aa24.14■■□□□ 1.46
VPS28-205ENST00000526204 CALML3P27482 149 aa24.14■■□□□ 1.46
VPS28-205ENST00000526204 ELF2Q15723 593 aa24.14■■□□□ 1.46
VPS28-205ENST00000526204 IQUBQ8NA54 791 aa24.14■■□□□ 1.46
VPS28-205ENST00000526204 DDX41Q9UJV9 622 aaKnown RBP24.14■■□□□ 1.46
VPS28-205ENST00000526204 PPP2R2CQ9Y2T4 447 aa24.14■■□□□ 1.46
VPS28-205ENST00000526204 VWA3AA6NCI4 1184 aa24.14■■□□□ 1.45
VPS28-205ENST00000526204 CUL4BQ13620 913 aa24.14■■□□□ 1.45
VPS28-205ENST00000526204 CTAGE1Q96RT6 745 aa24.14■■□□□ 1.45
VPS28-205ENST00000526204 TAF1P21675 1872 aa24.14■■□□□ 1.45
VPS28-205ENST00000526204 KCNQ4P56696 695 aa24.13■■□□□ 1.45
VPS28-205ENST00000526204 GOLGA8FQ08AF8 430 aa24.13■■□□□ 1.45
VPS28-205ENST00000526204 GOLGA8DPQ0D2H9 430 aa24.13■■□□□ 1.45
VPS28-205ENST00000526204 FAM98CQ17RN3 349 aaKnown RBP24.13■■□□□ 1.45
VPS28-205ENST00000526204 DZIP1Q86YF9 867 aaKnown RBP24.13■■□□□ 1.45
VPS28-205ENST00000526204 BCL11BQ9C0K0 894 aaPredicted RBP24.13■■□□□ 1.45
VPS28-205ENST00000526204 NOL12Q9UGY1 213 aaKnown RBP eCLIP24.13■■□□□ 1.45
VPS28-205ENST00000526204 V9GYY5 206 aaPredicted RBP24.13■■□□□ 1.45
VPS28-205ENST00000526204 SYNRGQ9UMZ2 1314 aa24.13■■□□□ 1.45
VPS28-205ENST00000526204 WNT7AO00755 349 aa24.13■■□□□ 1.45
VPS28-205ENST00000526204 DGKHQ86XP1 1220 aa24.13■■□□□ 1.45
VPS28-205ENST00000526204 SH3GLB2Q9NR46 395 aa24.13■■□□□ 1.45
VPS28-205ENST00000526204 MCM9Q9NXL9 1143 aa24.13■■□□□ 1.45
VPS28-205ENST00000526204 KMT5BQ4FZB7 885 aa24.12■■□□□ 1.45
VPS28-205ENST00000526204 CCDC178Q5BJE1 867 aa24.12■■□□□ 1.45
VPS28-205ENST00000526204 PIK3AP1Q6ZUJ8 805 aa24.12■■□□□ 1.45
VPS28-205ENST00000526204 KAT14Q9H8E8 782 aa24.12■■□□□ 1.45
VPS28-205ENST00000526204 CYP2D6P10635 497 aa24.11■■□□□ 1.45
VPS28-205ENST00000526204 EVX2Q03828 476 aa24.11■■□□□ 1.45
VPS28-205ENST00000526204 PTPN21Q16825 1174 aa24.11■■□□□ 1.45
VPS28-205ENST00000526204 ARL6IP4Q66PJ3 421 aaKnown RBP24.11■■□□□ 1.45
VPS28-205ENST00000526204 RCSD1Q6JBY9 416 aa24.11■■□□□ 1.45
VPS28-205ENST00000526204 SRP68Q9UHB9 627 aaKnown RBP24.11■■□□□ 1.45
VPS28-205ENST00000526204 NOM1Q5C9Z4 860 aaKnown RBP24.11■■□□□ 1.45
VPS28-205ENST00000526204 CDKAL1Q5VV42 579 aa24.11■■□□□ 1.45
VPS28-205ENST00000526204 ANKS1AQ92625 1134 aa24.11■■□□□ 1.45
VPS28-205ENST00000526204 PANX2Q96RD6 677 aa24.11■■□□□ 1.45
VPS28-205ENST00000526204 CD44P16070 742 aaKnown RBP24.1■■□□□ 1.45
VPS28-205ENST00000526204 TM4SF1P30408 202 aa24.1■■□□□ 1.45
VPS28-205ENST00000526204 ADKP55263 362 aaKnown RBP24.1■■□□□ 1.45
VPS28-205ENST00000526204 E2F4Q16254 413 aa24.1■■□□□ 1.45
VPS28-205ENST00000526204 FILIP1LQ4L180 1135 aa24.1■■□□□ 1.45
VPS28-205ENST00000526204 CASZ1Q86V15 1759 aa24.1■■□□□ 1.45
VPS28-205ENST00000526204 PPP1R3GB7ZBB8 358 aa24.1■■□□□ 1.45
VPS28-205ENST00000526204 AKR1B15C9JRZ8 316 aaPredicted RBP24.1■■□□□ 1.45
VPS28-205ENST00000526204 C12orf60Q5U649 245 aa24.1■■□□□ 1.45
VPS28-205ENST00000526204 KLHL10Q6JEL2 608 aa24.1■■□□□ 1.45
VPS28-205ENST00000526204 APTXQ7Z2E3 356 aaKnown RBP24.1■■□□□ 1.45
VPS28-205ENST00000526204 WDR66Q8TBY9 1149 aa24.1■■□□□ 1.45
VPS28-205ENST00000526204 IRS2Q9Y4H2 1338 aa24.09■■□□□ 1.45
VPS28-205ENST00000526204 LAMB1P07942 1786 aa24.09■■□□□ 1.45
VPS28-205ENST00000526204 MAST2Q6P0Q8 1798 aa24.09■■□□□ 1.45
VPS28-205ENST00000526204 GNPATO15228 680 aa24.09■■□□□ 1.45
VPS28-205ENST00000526204 ZSCAN20P17040 1043 aaPredicted RBP24.09■■□□□ 1.45
VPS28-205ENST00000526204 GNAQP50148 359 aa24.09■■□□□ 1.45
VPS28-205ENST00000526204 FBXO38Q6PIJ6 1188 aa24.09■■□□□ 1.45
VPS28-205ENST00000526204 AEBP2Q6ZN18 517 aaPredicted RBP24.09■■□□□ 1.45
VPS28-205ENST00000526204 NAA15Q9BXJ9 866 aaKnown RBP24.09■■□□□ 1.45
VPS28-205ENST00000526204 LONP1P36776 959 aaKnown RBP24.08■■□□□ 1.45
VPS28-205ENST00000526204 TFAP4Q01664 338 aa24.08■■□□□ 1.45
VPS28-205ENST00000526204 BLIDQ8IZY5 108 aa24.08■■□□□ 1.45
VPS28-205ENST00000526204 ADD3Q9UEY8 706 aaKnown RBP24.08■■□□□ 1.45
VPS28-205ENST00000526204 MKRN1Q9UHC7 482 aaKnown RBP24.08■■□□□ 1.45
VPS28-205ENST00000526204 RTCBQ9Y3I0 505 aaKnown RBP24.08■■□□□ 1.45
VPS28-205ENST00000526204 LDHBP07195 334 aaKnown RBP24.08■■□□□ 1.45
VPS28-205ENST00000526204 MCM7P33993 719 aa24.08■■□□□ 1.45
VPS28-205ENST00000526204 GSTO1P78417 241 aa24.08■■□□□ 1.45
VPS28-205ENST00000526204 SMIM5Q71RC9 77 aa24.08■■□□□ 1.45
VPS28-205ENST00000526204 TXNRD3Q86VQ6 643 aa24.08■■□□□ 1.45
VPS28-205ENST00000526204 PPFIBP1Q86W92 1011 aa24.08■■□□□ 1.45
VPS28-205ENST00000526204 AMOTL1Q8IY63 956 aa24.08■■□□□ 1.45
VPS28-205ENST00000526204 COL24A1Q17RW2 1714 aa24.08■■□□□ 1.44
VPS28-205ENST00000526204 USP17L8P0C7I0 530 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 USP5P45974 858 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 VPS72Q15906 364 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 ERCC6LQ2NKX8 1250 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 UTP14CQ5TAP6 766 aaKnown RBP24.07■■□□□ 1.44
VPS28-205ENST00000526204 PNMA1Q8ND90 353 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 GTPBP4Q9BZE4 634 aaKnown RBP24.07■■□□□ 1.44
VPS28-205ENST00000526204 LEMD3Q9Y2U8 911 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 XDHP47989 1333 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 KIAA1551Q9HCM1 1747 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 UBAP1LF5GYI3 381 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 GTPBP6O43824 516 aaPredicted RBP24.07■■□□□ 1.44
VPS28-205ENST00000526204 URI1O94763 535 aaPredicted RBP24.07■■□□□ 1.44
VPS28-205ENST00000526204 CASP1P29466 404 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 TXLNAP40222 546 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 STX17P56962 302 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 PDXDC2PQ6P474 469 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 RMND1Q9NWS8 449 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 PCDHA4Q9UN74 947 aa24.07■■□□□ 1.44
VPS28-205ENST00000526204 MYH13Q9UKX3 1938 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms