RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 USP17L22D6RA61 530 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 USP17L17D6RBQ6 530 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 USP17L19D6RCP7 530 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 USP17L20D6RJB6 530 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 MBD4O95243 580 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 POLR3DP05423 398 aaPredicted RBP12.13□□□□□ -0.47
VPS28-204ENST00000526054 SHMT1P34896 483 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 CCNA1P78396 465 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 USP17L24Q0WX57 530 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 Q3C1V9 767 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 TTC22Q5TAA0 569 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 PLEKHH3Q7Z736 793 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 LCORLQ8N3X6 602 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 KIAA1683Q9H0B3 1180 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 C11orf49Q9H6J7 331 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 OGDHLQ9ULD0 1010 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 A0A0G2JMZ2 1700 aa12.13□□□□□ -0.47
VPS28-204ENST00000526054 ZNF236Q9UL36 1845 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 BAZ2AQ9UIF9 1905 aaKnown RBP12.12□□□□□ -0.47
VPS28-204ENST00000526054 PLCD1P51178 756 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 CCL14Q16627 93 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 SLFNL1Q499Z3 407 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 MORN1Q5T089 497 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 WDR78Q5VTH9 848 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 POTEEQ6S8J3 1075 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 ACER1Q8TDN7 264 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 USP6NLQ92738 828 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 DDRGK1Q96HY6 314 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 ARMT1Q9H993 441 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 MCM9Q9NXL9 1143 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 RABGAP1Q9Y3P9 1069 aa12.12□□□□□ -0.47
VPS28-204ENST00000526054 HIP1O00291 1037 aa12.11□□□□□ -0.47
VPS28-204ENST00000526054 MPHOSPH10O00566 681 aaKnown RBP12.11□□□□□ -0.47
VPS28-204ENST00000526054 CNMDO75829 334 aa12.11□□□□□ -0.47
VPS28-204ENST00000526054 CHGBP05060 677 aa12.11□□□□□ -0.47
VPS28-204ENST00000526054 MNX1P50219 401 aaPredicted RBP12.11□□□□□ -0.47
VPS28-204ENST00000526054 CACNB2Q08289 660 aaPredicted RBP12.11□□□□□ -0.47
VPS28-204ENST00000526054 MAP2K5Q13163 448 aa12.11□□□□□ -0.47
VPS28-204ENST00000526054 ZMYM1Q5SVZ6 1142 aa12.11□□□□□ -0.47
VPS28-204ENST00000526054 CATSPERGQ6ZRH7 1159 aa12.11□□□□□ -0.47
VPS28-204ENST00000526054 PUS7LQ9H0K6 701 aaKnown RBP12.11□□□□□ -0.47
VPS28-204ENST00000526054 RPAP3Q9H6T3 665 aaPredicted RBP12.11□□□□□ -0.47
VPS28-204ENST00000526054 ZMYND8Q9ULU4 1186 aaPredicted RBP12.11□□□□□ -0.47
VPS28-204ENST00000526054 SPDYE16A6NNV3 312 aaPredicted RBP12.1□□□□□ -0.47
VPS28-204ENST00000526054 GPAA1O43292 621 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 GSPT1P15170 499 aaKnown RBP12.1□□□□□ -0.47
VPS28-204ENST00000526054 GNAT2P19087 354 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 CCND3P30281 292 aaPredicted RBP12.1□□□□□ -0.47
VPS28-204ENST00000526054 GUCY1A2P33402 732 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 EVX2Q03828 476 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 GABPAQ06546 454 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 SEPT2Q15019 361 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 LBX2Q6XYB7 198 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 AMOTL1Q8IY63 956 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 SDR42E1Q8WUS8 393 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 OSBP2Q969R2 916 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 HELLSQ9NRZ9 838 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 DIAPH3Q9NSV4 1193 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 ATP8A2Q9NTI2 1148 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 SLC4A4Q9Y6R1 1079 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 IVNS1ABPQ9Y6Y0 642 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 PFASO15067 1338 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 COL6A3P12111 3177 aa12.1□□□□□ -0.47
VPS28-204ENST00000526054 PARP14Q460N5 1801 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 SLC15A5A6NIM6 579 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 M0R2C6 588 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 SYN1P17600 705 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 SDSP20132 328 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 MFSD14CQ5VZR4 134 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 STRBPQ96SI9 672 aaKnown RBP12.09□□□□□ -0.47
VPS28-204ENST00000526054 TANGO6Q9C0B7 1094 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 DCP1AQ9NPI6 582 aaPredicted RBP12.09□□□□□ -0.47
VPS28-204ENST00000526054 BTBD7Q9P203 1132 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 RLFQ13129 1914 aa12.09□□□□□ -0.47
VPS28-204ENST00000526054 SOX1O00570 391 aaPredicted RBP12.08□□□□□ -0.48
VPS28-204ENST00000526054 PRKAB2O43741 272 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 CYP2D6P10635 497 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 PTPREP23469 700 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 NMIQ13287 307 aaPredicted RBP12.08□□□□□ -0.48
VPS28-204ENST00000526054 GRB14Q14449 540 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 TMEM179Q6ZVK1 233 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 SLC44A5Q8NCS7 719 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 GDF15Q99988 308 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 FLRT1Q9NZU1 646 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 SWAP70Q9UH65 585 aa12.08□□□□□ -0.48
VPS28-204ENST00000526054 A0A0D9SFI3 127 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 A0A1W2PRG0 241 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 COL6A1P12109 1028 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 BMP8BP34820 402 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 MAGEA10P43363 369 aaPredicted RBP12.07□□□□□ -0.48
VPS28-204ENST00000526054 MFAP1P55081 439 aaKnown RBP12.07□□□□□ -0.48
VPS28-204ENST00000526054 ATP2B2Q01814 1243 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 MCMDC2Q4G0Z9 681 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 LHX8Q68G74 356 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 GIMAP6Q6P9H5 292 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 CLEC10AQ8IUN9 316 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 LRCH3Q96II8 777 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 FAM227BQ96M60 508 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 SEC62Q99442 399 aaKnown RBP12.07□□□□□ -0.48
VPS28-204ENST00000526054 NACAP1Q9BZK3 213 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms