RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 SAMD7Q7Z3H4 446 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 ZBED3Q96IU2 234 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 OSBPL5Q9H0X9 879 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 TOMM22Q9NS69 142 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 GPRC5DQ9NZD1 345 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 KIAA1468Q9P260 1216 aa18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 ZNF70Q9UC06 446 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-213ENST00000510187 EGFRP00533 1210 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 METAP2P50579 478 aaKnown RBP eCLIP18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 PLCD1P51178 756 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 NDUFA8P51970 172 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 LRMPQ12912 555 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 NBPF9Q3BBW0 867 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 SPDYE2Q495Y8 402 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 TBC1D10BQ4KMP7 808 aaPredicted RBP18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 CACTINQ8WUQ7 758 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 TIGD1Q96MW7 591 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 CNNM2Q9H8M5 875 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 FAM198AQ9UFP1 575 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 TACC3Q9Y6A5 838 aa18.45■□□□□ 0.54
SQSTM1-213ENST00000510187 NID2Q14112 1375 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 STK36Q9NRP7 1315 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 B4E1Z4 1266 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 NPM3O75607 178 aaKnown RBP18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 ZRSR1Q15695 479 aaKnown RBP18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 CCDC144BQ3MJ40 725 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 RRP12Q5JTH9 1297 aaKnown RBP18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 OTUD7BQ6GQQ9 843 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 DPY19L2Q6NUT2 758 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 SGMS1Q86VZ5 419 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 LRRC8AQ8IWT6 810 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 CCDC144CPQ8IYA2 1237 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 KRT23Q9C075 422 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 FOCADQ5VW36 1801 aa18.44■□□□□ 0.54
SQSTM1-213ENST00000510187 ECM29Q5VYK3 1845 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 A0A1B0GVL5 298 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 CTIFO43310 598 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 PPFIA3O75145 1194 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 PCP11498 1178 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 GSDMDP57764 484 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 SLC39A14Q15043 492 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 KIF4BQ2VIQ3 1234 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 AXDND1Q5T1B0 1012 aaPredicted RBP18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 APOA5Q6Q788 366 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 ZFPM1Q8IX07 1006 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 JMYQ8N9B5 988 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 VEZTQ9HBM0 779 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 KCND1Q9NSA2 647 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 ZC3H4Q9UPT8 1303 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 DDX60LQ5H9U9 1706 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 SMTNL1A8MU46 457 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 KIF28PB7ZC32 967 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 TCP10L2B9ZVM9 353 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 RIOK3O14730 519 aaKnown RBP18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 PPP6R2O75170 966 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 ENTPD3O75355 529 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 PDE4BQ07343 736 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 SYCP1Q15431 976 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 CYB5R4Q7L1T6 521 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 AOPEPQ8N6M6 819 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 DYNLL2Q96FJ2 89 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 ALG1Q9BT22 464 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 IMPACTQ9P2X3 320 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 PAXBP1Q9Y5B6 917 aa18.43■□□□□ 0.54
SQSTM1-213ENST00000510187 LAMB1P07942 1786 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 ROBO3Q96MS0 1386 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 FAM237AA0A1B0GTK4 181 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 PRDM1O75626 825 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 FGRP09769 529 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 LMOD1P29536 600 aaPredicted RBP18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 EPS15P42566 896 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 LIFRP42702 1097 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 NLRP12P59046 1061 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 TPM4P67936 248 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 ZSCAN29Q8IWY8 852 aaPredicted RBP18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 ZNF710Q8N1W2 664 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 NKX2-3Q8TAU0 364 aa18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 DHX36Q9H2U1 1008 aaKnown RBP18.42■□□□□ 0.54
SQSTM1-213ENST00000510187 ZBTB43O43298 467 aa18.41■□□□□ 0.54
SQSTM1-213ENST00000510187 HLA-DOAP06340 250 aa18.41■□□□□ 0.54
SQSTM1-213ENST00000510187 IGDCC4Q8TDY8 1250 aa18.41■□□□□ 0.54
SQSTM1-213ENST00000510187 ESR2Q92731 530 aa18.41■□□□□ 0.54
SQSTM1-213ENST00000510187 MTA3Q9BTC8 594 aa18.41■□□□□ 0.54
SQSTM1-213ENST00000510187 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.41■□□□□ 0.544e-6■■■□□ 14.9
SQSTM1-213ENST00000510187 MYH1P12882 1939 aa18.41■□□□□ 0.54
SQSTM1-213ENST00000510187 ZNF202O95125 648 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 FKBP1CQ5VVH2 108 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 LY9Q9HBG7 655 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 MKNK2Q9HBH9 465 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 ZNF287Q9HBT7 754 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 ZSWIM5Q9P217 1185 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 DDTLA6NHG4 134 aaPredicted RBP18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 ORC4O43929 436 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 RANBP6O60518 1105 aaKnown RBP18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 TNNT1P13805 278 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 PFKFB1P16118 471 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 U2AF2P26368 475 aaKnown RBP eCLIP18.4■□□□□ 0.542e-10■□□□□ 8.4
SQSTM1-213ENST00000510187 KRT40Q6A162 431 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 C16orf86Q6ZW13 317 aa18.4■□□□□ 0.54
SQSTM1-213ENST00000510187 SLC44A5Q8NCS7 719 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms