RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 TM4SF20Q53R12 229 aa5.72□□□□□ -1.49
USP53-204ENST00000507906 HP1BP3Q5SSJ5 553 aaPredicted RBP5.72□□□□□ -1.49
USP53-204ENST00000507906 BEND7Q8N7W2 519 aaPredicted RBP5.72□□□□□ -1.49
USP53-204ENST00000507906 C12orf50Q8NA57 414 aaPredicted RBP5.72□□□□□ -1.49
USP53-204ENST00000507906 ZCRB1Q8TBF4 217 aaKnown RBP5.72□□□□□ -1.49
USP53-204ENST00000507906 DHRS1Q96LJ7 313 aa5.72□□□□□ -1.49
USP53-204ENST00000507906 EPN3Q9H201 632 aa5.72□□□□□ -1.49
USP53-204ENST00000507906 ATXN3LQ9H3M9 355 aa5.72□□□□□ -1.49
USP53-204ENST00000507906 ANKRD34BA5PLL1 514 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 FAM83GA6ND36 823 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 IRS4O14654 1257 aaPredicted RBP5.71□□□□□ -1.5
USP53-204ENST00000507906 DYNC1LI2O43237 492 aaPredicted RBP5.71□□□□□ -1.5
USP53-204ENST00000507906 MARCH6O60337 910 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 RNGTTO60942 597 aaKnown RBP5.71□□□□□ -1.5
USP53-204ENST00000507906 GBP1P32455 592 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 PPP2R2AP63151 447 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 PABPC4Q13310 644 aaKnown RBP eCLIP5.71□□□□□ -1.5
USP53-204ENST00000507906 LONRF2Q1L5Z9 754 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 NBPF12Q5TAG4 269 aaPredicted RBP5.71□□□□□ -1.5
USP53-204ENST00000507906 ARMCX6Q7L4S7 300 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 ZNF227Q86WZ6 799 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 THNSL2Q86YJ6 484 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 UBR7Q8N806 425 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 CYB5D2Q8WUJ1 264 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 OSBP2Q969R2 916 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 SGSM3Q96HU1 749 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 SLC26A8Q96RN1 970 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 FOXQ1Q9C009 403 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 RNF208Q9H0X6 261 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 LGR6Q9HBX8 967 aa5.71□□□□□ -1.5
USP53-204ENST00000507906 DDX56Q9NY93 547 aaKnown RBP5.71□□□□□ -1.5
USP53-204ENST00000507906 F8W735 103 aaPredicted RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 CLEC3AO75596 197 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 PROCP04070 461 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 MYCLP1P12525 358 aaPredicted RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 SDSP20132 328 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 PREPP48147 710 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 CDKN1CP49918 316 aaPredicted RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 SF1Q15637 639 aaKnown RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 GRIK4Q16099 956 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 HEATR6Q6AI08 1181 aaKnown RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 CDC37L1Q7L3B6 337 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 CCDC144CPQ8IYA2 1237 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 SMYD4Q8IYR2 804 aaPredicted RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 LRRC47Q8N1G4 583 aaKnown RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 LRRN4CLQ8ND94 238 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 NINJ1Q92982 152 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 PSMG3-AS1Q96PY0 264 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 APBA2Q99767 749 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 DHRS4Q9BTZ2 278 aa5.7□□□□□ -1.5
USP53-204ENST00000507906 NCOA5Q9HCD5 579 aaKnown RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 CWC22Q9HCG8 908 aaKnown RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 MRPS23Q9Y3D9 190 aaKnown RBP5.7□□□□□ -1.5
USP53-204ENST00000507906 LRRN2O75325 713 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 SLITRK5O94991 958 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 RAC1P63000 192 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 PLEKHG6Q3KR16 790 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 BBS9Q3SYG4 887 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 CDPF1Q6NVV7 123 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 IGF2-ASQ6U949 168 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 KRT26Q7Z3Y9 468 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 CDH24Q86UP0 819 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.69□□□□□ -1.5
USP53-204ENST00000507906 NIM1KQ8IY84 436 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 MRGPRX3Q96LB0 322 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 KREMEN1Q96MU8 473 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 ACSS3Q9H6R3 686 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 CYP4F12Q9HCS2 524 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 CEP131Q9UPN4 1083 aa5.69□□□□□ -1.5
USP53-204ENST00000507906 IQCA1LA6NCM1 817 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 SPDYE3A6NKU9 549 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 PRODHO43272 600 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 KCNQ2O43526 872 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 ADAM23O75077 832 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 RFPL3O75679 317 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 PARNO95453 639 aaKnown RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 C6orf222P0C671 652 aaPredicted RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 PABPC1P11940 636 aaKnown RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 COL8A1P27658 744 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 ZNF143P52747 638 aaPredicted RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 SNW1Q13573 536 aaKnown RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 ANKRD39Q53RE8 183 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 XP32Q5T750 250 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 TMEM130Q8N3G9 435 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 SYNPOQ8N3V7 929 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 PRPF38AQ8NAV1 312 aaKnown RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 ADCY4Q8NFM4 1077 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 BRF1Q92994 677 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 PPP1R14AQ96A00 147 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 MFSD3Q96ES6 412 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 UBL7Q96S82 380 aaPredicted RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 AARSD1Q9BTE6 412 aaKnown RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP53-204ENST00000507906 MRPL18Q9H0U6 180 aaKnown RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 PIDD1Q9HB75 910 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 SSU72Q9NP77 194 aaKnown RBP5.68□□□□□ -1.5
USP53-204ENST00000507906 PLAAQ9Y263 795 aa5.68□□□□□ -1.5
USP53-204ENST00000507906 TRBV23-1A0A0A0MS06 115 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 TRAV20A0A0B4J274 112 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 BLACEA4D250 179 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms