RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 AEBP2Q6ZN18 517 aaPredicted RBP17.94■□□□□ 0.46
USP53-204ENST00000507906 CHIC1Q5VXU3 224 aa16.91■□□□□ 0.3
USP53-204ENST00000507906 SENP3Q9H4L4 574 aaPredicted RBP15.2■□□□□ 0.02
USP53-204ENST00000507906 PHF23Q9BUL5 403 aaPredicted RBP15.05■□□□□ -0
USP53-204ENST00000507906 FOXD1Q16676 465 aa14.26□□□□□ -0.13
USP53-204ENST00000507906 PLPPR3Q6T4P5 718 aa13.48□□□□□ -0.25
USP53-204ENST00000507906 PIAS4Q8N2W9 510 aaPredicted RBP13.35□□□□□ -0.27
USP53-204ENST00000507906 PPP6R1Q9UPN7 881 aa13.34□□□□□ -0.27
USP53-204ENST00000507906 ADRA2BP18089 450 aa13.33□□□□□ -0.28
USP53-204ENST00000507906 MSH5O43196 834 aa13.24□□□□□ -0.29
USP53-204ENST00000507906 POTEDQ86YR6 584 aa13.09□□□□□ -0.31
USP53-204ENST00000507906 KCNA4P22459 653 aa12.33□□□□□ -0.44
USP53-204ENST00000507906 MAPK8IP2Q13387 824 aaPredicted RBP12.27□□□□□ -0.45
USP53-204ENST00000507906 DMRT2Q9Y5R5 561 aa12.06□□□□□ -0.48
USP53-204ENST00000507906 EHMT2Q96KQ7 1210 aa12.04□□□□□ -0.48
USP53-204ENST00000507906 SCAF1Q9H7N4 1312 aaKnown RBP12.02□□□□□ -0.49
USP53-204ENST00000507906 PPP4R3CPQ6ZMV5 832 aa11.96□□□□□ -0.49
USP53-204ENST00000507906 DCAF8L1A6NGE4 600 aa11.75□□□□□ -0.53
USP53-204ENST00000507906 SLC4A1APQ9BWU0 796 aaKnown RBP11.74□□□□□ -0.53
USP53-204ENST00000507906 CSRNP3Q8WYN3 585 aa11.71□□□□□ -0.53
USP53-204ENST00000507906 NPM3O75607 178 aaKnown RBP11.66□□□□□ -0.54
USP53-204ENST00000507906 NCBP3Q53F19 620 aaKnown RBP11.66□□□□□ -0.54
USP53-204ENST00000507906 CNKSR2Q8WXI2 1034 aa11.59□□□□□ -0.55
USP53-204ENST00000507906 HOXD11P31277 338 aaPredicted RBP11.56□□□□□ -0.56
USP53-204ENST00000507906 CACNB1Q02641 598 aaPredicted RBP11.5□□□□□ -0.57
USP53-204ENST00000507906 RNF216Q9NWF9 866 aaPredicted RBP11.47□□□□□ -0.57
USP53-204ENST00000507906 ZBTB22O15209 634 aa11.43□□□□□ -0.58
USP53-204ENST00000507906 RNF39Q9H2S5 420 aa11.33□□□□□ -0.6
USP53-204ENST00000507906 DNAJC5BQ9UF47 199 aa11.16□□□□□ -0.62
USP53-204ENST00000507906 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.13□□□□□ -0.63
USP53-204ENST00000507906 C1QBPQ07021 282 aaKnown RBP11.11□□□□□ -0.63
USP53-204ENST00000507906 FOXD4L1Q9NU39 408 aa11.09□□□□□ -0.63
USP53-204ENST00000507906 SLC4A2P04920 1241 aa10.95□□□□□ -0.66
USP53-204ENST00000507906 U3KPZ7 1027 aaPredicted RBP10.88□□□□□ -0.67
USP53-204ENST00000507906 SPINK5Q9NQ38 1064 aaPredicted RBP10.8□□□□□ -0.68
USP53-204ENST00000507906 CAPN15O75808 1086 aa10.77□□□□□ -0.69
USP53-204ENST00000507906 MYCNP04198 464 aaPredicted RBP10.64□□□□□ -0.71
USP53-204ENST00000507906 DSG3P32926 999 aa10.63□□□□□ -0.71
USP53-204ENST00000507906 ATXN8OSP0DMR3 200 aa10.61□□□□□ -0.71
USP53-204ENST00000507906 TRHP20396 242 aaPredicted RBP10.61□□□□□ -0.71
USP53-204ENST00000507906 ABCB7O75027 752 aa10.59□□□□□ -0.71
USP53-204ENST00000507906 ATF5Q9Y2D1 282 aaPredicted RBP10.53□□□□□ -0.72
USP53-204ENST00000507906 RTN4Q9NQC3 1192 aaKnown RBP10.51□□□□□ -0.73
USP53-204ENST00000507906 FKBP8Q14318 412 aa10.49□□□□□ -0.73
USP53-204ENST00000507906 ZNF219Q9P2Y4 722 aaPredicted RBP10.44□□□□□ -0.74
USP53-204ENST00000507906 APLP2Q06481 763 aa10.43□□□□□ -0.74
USP53-204ENST00000507906 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.42□□□□□ -0.74
USP53-204ENST00000507906 HNRNPUL2Q1KMD3 747 aaKnown RBP10.42□□□□□ -0.74
USP53-204ENST00000507906 SAMD1Q6SPF0 538 aaPredicted RBP10.4□□□□□ -0.74
USP53-204ENST00000507906 AMER1Q5JTC6 1135 aaPredicted RBP10.33□□□□□ -0.76
USP53-204ENST00000507906 POLA2Q14181 598 aa10.27□□□□□ -0.77
USP53-204ENST00000507906 POTEHQ6S545 545 aa10.24□□□□□ -0.77
USP53-204ENST00000507906 SLC24A1O60721 1099 aa10.2□□□□□ -0.78
USP53-204ENST00000507906 MKRN4PQ13434 485 aaPredicted RBP10.08□□□□□ -0.8
USP53-204ENST00000507906 RBM42Q9BTD8 480 aaKnown RBP10.07□□□□□ -0.8
USP53-204ENST00000507906 OSCARQ8IYS5 282 aa9.99□□□□□ -0.81
USP53-204ENST00000507906 SPDYE4A6NLX3 237 aa9.97□□□□□ -0.81
USP53-204ENST00000507906 CHRDL2Q6WN34 429 aa9.95□□□□□ -0.82
USP53-204ENST00000507906 PROM2Q8N271 834 aa9.92□□□□□ -0.82
USP53-204ENST00000507906 ZBTB12Q9Y330 459 aaPredicted RBP9.92□□□□□ -0.82
USP53-204ENST00000507906 AKT1S1Q96B36 256 aa9.84□□□□□ -0.83
USP53-204ENST00000507906 REM2Q8IYK8 340 aaPredicted RBP9.83□□□□□ -0.84
USP53-204ENST00000507906 FBXO3Q9UK99 471 aa9.83□□□□□ -0.84
USP53-204ENST00000507906 VASPP50552 380 aaPredicted RBP9.81□□□□□ -0.84
USP53-204ENST00000507906 FBLN2P98095 1184 aa9.81□□□□□ -0.84
USP53-204ENST00000507906 IFNLR1Q8IU57 520 aaPredicted RBP9.79□□□□□ -0.84
USP53-204ENST00000507906 PITPNM1O00562 1244 aa9.77□□□□□ -0.85
USP53-204ENST00000507906 PIP4P2Q8N4L2 257 aa9.73□□□□□ -0.85
USP53-204ENST00000507906 PKD2Q13563 968 aa9.67□□□□□ -0.86
USP53-204ENST00000507906 SPDYE2BA6NHP3 402 aa9.64□□□□□ -0.87
USP53-204ENST00000507906 SPDYE6P0CI01 402 aa9.64□□□□□ -0.87
USP53-204ENST00000507906 SPDYE2Q495Y8 402 aa9.64□□□□□ -0.87
USP53-204ENST00000507906 CLEC11AQ9Y240 323 aa9.63□□□□□ -0.87
USP53-204ENST00000507906 PLCB2Q00722 1185 aa9.61□□□□□ -0.87
USP53-204ENST00000507906 ZNF692Q9BU19 519 aaPredicted RBP9.6□□□□□ -0.87
USP53-204ENST00000507906 HAX1O00165 279 aa9.59□□□□□ -0.87
USP53-204ENST00000507906 FXR2P51116 673 aaKnown RBP eCLIP9.59□□□□□ -0.87
USP53-204ENST00000507906 SP7Q8TDD2 431 aaPredicted RBP9.56□□□□□ -0.88
USP53-204ENST00000507906 DCAF8L2P0C7V8 631 aa9.52□□□□□ -0.89
USP53-204ENST00000507906 SSUH2Q9Y2M2 353 aa9.52□□□□□ -0.89
USP53-204ENST00000507906 PRKAR2AP13861 404 aaKnown RBP9.51□□□□□ -0.89
USP53-204ENST00000507906 EVX2Q03828 476 aa9.5□□□□□ -0.89
USP53-204ENST00000507906 SPDYE1Q8NFV5 336 aaPredicted RBP9.5□□□□□ -0.89
USP53-204ENST00000507906 PABPN1Q86U42 306 aaKnown RBP eCLIP9.49□□□□□ -0.89
USP53-204ENST00000507906 KLHL34Q8N239 644 aa9.48□□□□□ -0.89
USP53-204ENST00000507906 SPOCK2Q92563 424 aa9.48□□□□□ -0.89
USP53-204ENST00000507906 NPM1P06748 294 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP53-204ENST00000507906 CHADLQ6NUI6 762 aa9.47□□□□□ -0.89
USP53-204ENST00000507906 HAP1P54257 671 aaPredicted RBP9.46□□□□□ -0.9
USP53-204ENST00000507906 STAG3Q9UJ98 1225 aa9.42□□□□□ -0.9
USP53-204ENST00000507906 ECM2O94769 699 aaPredicted RBP9.4□□□□□ -0.9
USP53-204ENST00000507906 RGL2O15211 777 aa9.39□□□□□ -0.91
USP53-204ENST00000507906 MIER1Q8N108 512 aa9.39□□□□□ -0.91
USP53-204ENST00000507906 PLCD3Q8N3E9 789 aa9.39□□□□□ -0.91
USP53-204ENST00000507906 PRR29P0C7W0 189 aa9.37□□□□□ -0.91
USP53-204ENST00000507906 KDM2AQ9Y2K7 1162 aa9.34□□□□□ -0.91
USP53-204ENST00000507906 BBXQ8WY36 941 aaPredicted RBP9.33□□□□□ -0.92
USP53-204ENST00000507906 C19orf67A6NJJ6 358 aa9.3□□□□□ -0.92
USP53-204ENST00000507906 VSIG10Q8N0Z9 540 aa9.3□□□□□ -0.92
USP53-204ENST00000507906 PAXIP1Q6ZW49 1069 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms