RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 ZFYP08048 801 aaPredicted RBP12.72□□□□□ -0.37
NELFE-213ENST00000494956 EEF2P13639 858 aaKnown RBP12.72□□□□□ -0.37
NELFE-213ENST00000494956 RASA1P20936 1047 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 PDE1AP54750 535 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 UBXN2AP68543 259 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 ZMYM1Q5SVZ6 1142 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 GPR142Q7Z601 462 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 AMOTL1Q8IY63 956 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 PXYLP1Q8TE99 480 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 TRIB2Q92519 343 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 GCC1Q96CN9 775 aa12.72□□□□□ -0.37
NELFE-213ENST00000494956 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.72□□□□□ -0.37
NELFE-213ENST00000494956 ARPP21Q9UBL0 812 aaPredicted RBP12.72□□□□□ -0.37
NELFE-213ENST00000494956 ZBTB47Q9UFB7 747 aaPredicted RBP12.72□□□□□ -0.37
NELFE-213ENST00000494956 MKI67P46013 3256 aaKnown RBP12.71□□□□□ -0.37
NELFE-213ENST00000494956 MYH4Q9Y623 1939 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 FOXP2O15409 715 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 RAD21O60216 631 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 TDO2P48775 406 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 CCL14Q16627 93 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 SBK1Q52WX2 424 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 WDR78Q5VTH9 848 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 IFNL3Q8IZI9 196 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 U2AF1L4Q8WU68 220 aaKnown RBP12.71□□□□□ -0.37
NELFE-213ENST00000494956 CCDC17Q96LX7 622 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 DEFB118Q96PH6 123 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 TANGO6Q9C0B7 1094 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 INCENPQ9NQS7 918 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 TMX2Q9Y320 296 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 RABGAP1Q9Y3P9 1069 aa12.71□□□□□ -0.37
NELFE-213ENST00000494956 A0A0G2JMZ2 1700 aa12.71□□□□□ -0.38
NELFE-213ENST00000494956 PATL2C9JE40 543 aaKnown RBP12.7□□□□□ -0.38
NELFE-213ENST00000494956 GJB1P08034 283 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 GJA8P48165 433 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 VPS53Q5VIR6 699 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 PLEKHH3Q7Z736 793 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 CCAR1Q8IX12 1150 aaKnown RBP12.7□□□□□ -0.38
NELFE-213ENST00000494956 SMC5Q8IY18 1101 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 ATG4CQ96DT6 458 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 NUDT12Q9BQG2 462 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 VCPKMTQ9H867 229 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 ARHGEF10LQ9HCE6 1279 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 FBXO28Q9NVF7 368 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 STAP2Q9UGK3 403 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 TACC3Q9Y6A5 838 aa12.7□□□□□ -0.38
NELFE-213ENST00000494956 ROBO3Q96MS0 1386 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 HMGCRP04035 888 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 MAPK4P31152 587 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 COG2Q14746 738 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 MORN1Q5T089 497 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 PRPF38BQ5VTL8 546 aaKnown RBP12.69□□□□□ -0.38
NELFE-213ENST00000494956 GIMAP6Q6P9H5 292 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 LBX2Q6XYB7 198 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 USP6NLQ92738 828 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 FAM227BQ96M60 508 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 NUP88Q99567 741 aaPredicted RBP12.69□□□□□ -0.38
NELFE-213ENST00000494956 RWDD1Q9H446 243 aaPredicted RBP12.69□□□□□ -0.38
NELFE-213ENST00000494956 MKNK2Q9HBH9 465 aa12.69□□□□□ -0.38
NELFE-213ENST00000494956 A0A0D9SFI3 127 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 FLOT1O75955 427 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 SGPL1O95470 568 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 GNAT2P19087 354 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 DSG3P32926 999 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 CTDSPL2Q05D32 466 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 PLS1Q14651 629 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 FAM47AQ5JRC9 791 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 FAM83BQ5T0W9 1011 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 NPLOC4Q8TAT6 608 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 GTF3C2Q8WUA4 911 aaPredicted RBP12.68□□□□□ -0.38
NELFE-213ENST00000494956 CHMP4CQ96CF2 233 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 EVI5LQ96CN4 794 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 MOV10L1Q9BXT6 1211 aaKnown RBP12.68□□□□□ -0.38
NELFE-213ENST00000494956 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.68□□□□□ -0.38
NELFE-213ENST00000494956 NAPBQ9H115 298 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 KANSL2Q9H9L4 492 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 CWC22Q9HCG8 908 aaKnown RBP12.68□□□□□ -0.38
NELFE-213ENST00000494956 PAK6Q9NQU5 681 aaPredicted RBP12.68□□□□□ -0.38
NELFE-213ENST00000494956 FLRT1Q9NZU1 646 aa12.68□□□□□ -0.38
NELFE-213ENST00000494956 ZNFX1Q9P2E3 1918 aaKnown RBP12.68□□□□□ -0.38
NELFE-213ENST00000494956 ALPK3Q96L96 1907 aa12.67□□□□□ -0.38
NELFE-213ENST00000494956 TRIM6-TRIM34B2RNG4 842 aa12.67□□□□□ -0.38
NELFE-213ENST00000494956 PPARAQ07869 468 aa12.67□□□□□ -0.38
NELFE-213ENST00000494956 CACNB2Q08289 660 aaPredicted RBP12.67□□□□□ -0.38
NELFE-213ENST00000494956 LRRFIP1Q32MZ4 808 aaKnown RBP12.67□□□□□ -0.38
NELFE-213ENST00000494956 ZNF589Q86UQ0 364 aaPredicted RBP12.67□□□□□ -0.38
NELFE-213ENST00000494956 CHD1LQ86WJ1 897 aa12.67□□□□□ -0.38
NELFE-213ENST00000494956 PLEKHM2Q8IWE5 1019 aa12.67□□□□□ -0.38
NELFE-213ENST00000494956 DIS3LQ8TF46 1054 aaKnown RBP12.67□□□□□ -0.38
NELFE-213ENST00000494956 RILPL2Q969X0 211 aa12.67□□□□□ -0.38
NELFE-213ENST00000494956 IGKV6D-41A0A0C4DH26 115 aa12.66□□□□□ -0.38
NELFE-213ENST00000494956 WDR46O15213 610 aaKnown RBP12.66□□□□□ -0.38
NELFE-213ENST00000494956 FARP2O94887 1054 aaPredicted RBP12.66□□□□□ -0.38
NELFE-213ENST00000494956 TFRCP02786 760 aaKnown RBP12.66□□□□□ -0.38
NELFE-213ENST00000494956 PRKAR2AP13861 404 aaKnown RBP12.66□□□□□ -0.38
NELFE-213ENST00000494956 ERCC3P19447 782 aa12.66□□□□□ -0.38
NELFE-213ENST00000494956 PTPREP23469 700 aa12.66□□□□□ -0.38
NELFE-213ENST00000494956 CCND3P30281 292 aaPredicted RBP12.66□□□□□ -0.38
NELFE-213ENST00000494956 RGS2P41220 211 aa12.66□□□□□ -0.38
NELFE-213ENST00000494956 CCNA1P78396 465 aa12.66□□□□□ -0.38
NELFE-213ENST00000494956 NUCB1Q02818 461 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms