RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 CCDC129Q6ZRS4 1044 aa39.66■■■■□ 3.94
CBX4-203ENST00000494546 GJD2Q9UKL4 321 aa39.66■■■■□ 3.94
CBX4-203ENST00000494546 DOCK3Q8IZD9 2030 aa39.65■■■■□ 3.94
CBX4-203ENST00000494546 MAPK4P31152 587 aa39.65■■■■□ 3.94
CBX4-203ENST00000494546 SPICE1Q8N0Z3 855 aa39.65■■■■□ 3.94
CBX4-203ENST00000494546 LPAR1Q92633 364 aa39.65■■■■□ 3.94
CBX4-203ENST00000494546 NAPBQ9H115 298 aa39.65■■■■□ 3.94
CBX4-203ENST00000494546 PORCNQ9H237 461 aa39.65■■■■□ 3.94
CBX4-203ENST00000494546 VCPKMTQ9H867 229 aa39.65■■■■□ 3.94
CBX4-203ENST00000494546 SPDYE16A6NNV3 312 aaPredicted RBP39.64■■■■□ 3.94
CBX4-203ENST00000494546 TRIM6-TRIM34B2RNG4 842 aa39.64■■■■□ 3.94
CBX4-203ENST00000494546 CNMDO75829 334 aa39.64■■■■□ 3.94
CBX4-203ENST00000494546 INHAP05111 366 aa39.64■■■■□ 3.94
CBX4-203ENST00000494546 RNF208Q9H0X6 261 aa39.64■■■■□ 3.94
CBX4-203ENST00000494546 TNRC18O15417 2968 aaPredicted RBP39.63■■■■□ 3.93
CBX4-203ENST00000494546 LBX2Q6XYB7 198 aa39.63■■■■□ 3.93
CBX4-203ENST00000494546 GNL3Q9BVP2 549 aaKnown RBP eCLIP39.63■■■■□ 3.93
CBX4-203ENST00000494546 COG2Q14746 738 aa39.62■■■■□ 3.93
CBX4-203ENST00000494546 ZNF287Q9HBT7 754 aa39.62■■■■□ 3.93
CBX4-203ENST00000494546 CWC22Q9HCG8 908 aaKnown RBP39.62■■■■□ 3.93
CBX4-203ENST00000494546 PRDM1O75626 825 aa39.61■■■■□ 3.93
CBX4-203ENST00000494546 CCNA1P78396 465 aa39.61■■■■□ 3.93
CBX4-203ENST00000494546 PLEKHM2Q8IWE5 1019 aa39.61■■■■□ 3.93
CBX4-203ENST00000494546 UNC93B1Q9H1C4 597 aa39.61■■■■□ 3.93
CBX4-203ENST00000494546 GPR142Q7Z601 462 aa39.6■■■■□ 3.93
CBX4-203ENST00000494546 ZNF444Q8N0Y2 327 aaPredicted RBP39.6■■■■□ 3.93
CBX4-203ENST00000494546 RILPL2Q969X0 211 aa39.6■■■■□ 3.93
CBX4-203ENST00000494546 NUDT12Q9BQG2 462 aa39.6■■■■□ 3.93
CBX4-203ENST00000494546 HELLSQ9NRZ9 838 aa39.6■■■■□ 3.93
CBX4-203ENST00000494546 HOXC10Q9NYD6 342 aa39.6■■■■□ 3.93
CBX4-203ENST00000494546 BTBD7Q9P203 1132 aa39.6■■■■□ 3.93
CBX4-203ENST00000494546 CYP2B6P20813 491 aa39.59■■■■□ 3.93
CBX4-203ENST00000494546 SOCS4Q8WXH5 440 aa39.59■■■■□ 3.93
CBX4-203ENST00000494546 RAD21O60216 631 aa39.58■■■■□ 3.93
CBX4-203ENST00000494546 PPARAQ07869 468 aa39.58■■■■□ 3.93
CBX4-203ENST00000494546 WDR78Q5VTH9 848 aa39.58■■■■□ 3.93
CBX4-203ENST00000494546 PLEKHH3Q7Z736 793 aa39.58■■■■□ 3.93
CBX4-203ENST00000494546 FAM227BQ96M60 508 aa39.58■■■■□ 3.93
CBX4-203ENST00000494546 GOPCQ9HD26 462 aa39.58■■■■□ 3.93
CBX4-203ENST00000494546 WDR46O15213 610 aaKnown RBP39.57■■■■□ 3.93
CBX4-203ENST00000494546 FLOT1O75955 427 aa39.57■■■■□ 3.93
CBX4-203ENST00000494546 GJB1P08034 283 aa39.57■■■■□ 3.93
CBX4-203ENST00000494546 SLC3A2P08195 630 aaKnown RBP39.57■■■■□ 3.93
CBX4-203ENST00000494546 BRCA2P51587 3418 aa39.57■■■■□ 3.92
CBX4-203ENST00000494546 A0A0D9SFI3 127 aa39.56■■■■□ 3.92
CBX4-203ENST00000494546 FOXP2O15409 715 aa39.56■■■■□ 3.92
CBX4-203ENST00000494546 PDE4BQ07343 736 aa39.56■■■■□ 3.92
CBX4-203ENST00000494546 SAMD1Q6SPF0 538 aaPredicted RBP39.56■■■■□ 3.92
CBX4-203ENST00000494546 NKX2-3Q8TAU0 364 aa39.56■■■■□ 3.92
CBX4-203ENST00000494546 HMGCRP04035 888 aa39.55■■■■□ 3.92
CBX4-203ENST00000494546 VPS53Q5VIR6 699 aa39.55■■■■□ 3.92
CBX4-203ENST00000494546 OSBPL3Q9H4L5 887 aa39.55■■■■□ 3.92
CBX4-203ENST00000494546 MCMDC2Q4G0Z9 681 aa39.54■■■■□ 3.92
CBX4-203ENST00000494546 TICAM2Q86XR7 235 aa39.54■■■■□ 3.92
CBX4-203ENST00000494546 SHISA4Q96DD7 197 aa39.54■■■■□ 3.92
CBX4-203ENST00000494546 PLXNB2O15031 1838 aa39.54■■■■□ 3.92
CBX4-203ENST00000494546 DSG3P32926 999 aa39.53■■■■□ 3.92
CBX4-203ENST00000494546 GJA8P48165 433 aa39.53■■■■□ 3.92
CBX4-203ENST00000494546 NMIQ13287 307 aaPredicted RBP39.53■■■■□ 3.92
CBX4-203ENST00000494546 NYAP2Q9P242 653 aa39.53■■■■□ 3.92
CBX4-203ENST00000494546 GREB1LQ9C091 1923 aaPredicted RBP39.53■■■■□ 3.92
CBX4-203ENST00000494546 MORN1Q5T089 497 aa39.52■■■■□ 3.92
CBX4-203ENST00000494546 RGS2P41220 211 aa39.51■■■■□ 3.92
CBX4-203ENST00000494546 U2AF1L4Q8WU68 220 aaKnown RBP39.51■■■■□ 3.92
CBX4-203ENST00000494546 TRIB2Q92519 343 aa39.51■■■■□ 3.92
CBX4-203ENST00000494546 ATG4CQ96DT6 458 aa39.51■■■■□ 3.92
CBX4-203ENST00000494546 CLIP2Q9UDT6 1046 aa39.51■■■■□ 3.92
CBX4-203ENST00000494546 IGKV6D-41A0A0C4DH26 115 aa39.5■■■■□ 3.91
CBX4-203ENST00000494546 TSPY3P0CV98 308 aa39.5■■■■□ 3.91
CBX4-203ENST00000494546 TSPY8P0CW00 308 aa39.5■■■■□ 3.91
CBX4-203ENST00000494546 XRCC5P13010 732 aaKnown RBP39.5■■■■□ 3.91
CBX4-203ENST00000494546 CTDSPL2Q05D32 466 aa39.5■■■■□ 3.91
CBX4-203ENST00000494546 TRIM32Q13049 653 aa39.5■■■■□ 3.91
CBX4-203ENST00000494546 USP6NLQ92738 828 aa39.5■■■■□ 3.91
CBX4-203ENST00000494546 IVNS1ABPQ9Y6Y0 642 aa39.5■■■■□ 3.91
CBX4-203ENST00000494546 FAM47AQ5JRC9 791 aa39.49■■■■□ 3.91
CBX4-203ENST00000494546 FAM83BQ5T0W9 1011 aa39.49■■■■□ 3.91
CBX4-203ENST00000494546 MB21D1Q8N884 522 aa39.49■■■■□ 3.91
CBX4-203ENST00000494546 CEP95Q96GE4 821 aa39.49■■■■□ 3.91
CBX4-203ENST00000494546 MOV10L1Q9BXT6 1211 aaKnown RBP39.49■■■■□ 3.91
CBX4-203ENST00000494546 SPATC1LQ9H0A9 340 aa39.49■■■■□ 3.91
CBX4-203ENST00000494546 PLS1Q14651 629 aa39.48■■■■□ 3.91
CBX4-203ENST00000494546 DEFB118Q96PH6 123 aa39.48■■■■□ 3.91
CBX4-203ENST00000494546 FBXO28Q9NVF7 368 aa39.48■■■■□ 3.91
CBX4-203ENST00000494546 PDE4DIPQ5VU43 2346 aa39.47■■■■□ 3.91
CBX4-203ENST00000494546 ZKSCAN1P17029 563 aaPredicted RBP39.47■■■■□ 3.91
CBX4-203ENST00000494546 SDSP20132 328 aa39.47■■■■□ 3.91
CBX4-203ENST00000494546 TFAP4Q01664 338 aa39.47■■■■□ 3.91
CBX4-203ENST00000494546 ZNF589Q86UQ0 364 aaPredicted RBP39.47■■■■□ 3.91
CBX4-203ENST00000494546 APBA2Q99767 749 aa39.47■■■■□ 3.91
CBX4-203ENST00000494546 MTMR4Q9NYA4 1195 aa39.47■■■■□ 3.91
CBX4-203ENST00000494546 RLFQ13129 1914 aa39.47■■■■□ 3.91
CBX4-203ENST00000494546 F5H6K3 240 aa39.46■■■■□ 3.91
CBX4-203ENST00000494546 SGPL1O95470 568 aa39.46■■■■□ 3.91
CBX4-203ENST00000494546 PTPREP23469 700 aa39.46■■■■□ 3.91
CBX4-203ENST00000494546 KLRC3Q07444 240 aa39.46■■■■□ 3.91
CBX4-203ENST00000494546 MAP2K5Q13163 448 aa39.46■■■■□ 3.91
CBX4-203ENST00000494546 TRMT44Q8IYL2 757 aaKnown RBP39.46■■■■□ 3.91
CBX4-203ENST00000494546 NEDD1Q8NHV4 660 aa39.46■■■■□ 3.91
CBX4-203ENST00000494546 NUP88Q99567 741 aaPredicted RBP39.46■■■■□ 3.91
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms