RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 A0A1W2PRG0 241 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 TCRBV5S4A2TA0A5A2 114 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 SPDYE16A6NNV3 312 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 IGSF3O75054 1194 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 PTPREP23469 700 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 KIAA1755Q5JYT7 1200 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 CATSPERGQ6ZRH7 1159 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 CLEC10AQ8IUN9 316 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 LCORLQ8N3X6 602 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 LPAR1Q92633 364 aa16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 RPAP3Q9H6T3 665 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-208ENST00000485412 ZNF532Q9HCE3 1301 aa16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 DNM1LO00429 736 aa16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 GOLIM4O00461 696 aa16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 RTP1P59025 263 aa16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 SLC9C2Q5TAH2 1124 aa16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 TTC6Q86TZ1 520 aa16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 ERC1Q8IUD2 1116 aa16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 DNAJC2Q99543 621 aaKnown RBP16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 ZNFX1Q9P2E3 1918 aaKnown RBP16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 ZNF236Q9UL36 1845 aa16.8■□□□□ 0.28
SQSTM1-208ENST00000485412 POLR3DP05423 398 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 HOXC6P09630 235 aa16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 CYP2C19P33261 490 aa16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 GRB14Q14449 540 aa16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 CERS3Q8IU89 383 aa16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 NPLOC4Q8TAT6 608 aa16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 DYNLL2Q96FJ2 89 aa16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 CABP5Q9NP86 173 aa16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 ATP11BQ9Y2G3 1177 aa16.79■□□□□ 0.28
SQSTM1-208ENST00000485412 PRKAB2O43741 272 aa16.78■□□□□ 0.28
SQSTM1-208ENST00000485412 DPP9Q86TI2 863 aa16.78■□□□□ 0.28
SQSTM1-208ENST00000485412 TRPV1Q8NER1 839 aa16.78■□□□□ 0.28
SQSTM1-208ENST00000485412 ARMT1Q9H993 441 aa16.78■□□□□ 0.28
SQSTM1-208ENST00000485412 DCP1AQ9NPI6 582 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-208ENST00000485412 PRDM5Q9NQX1 630 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-208ENST00000485412 MCM9Q9NXL9 1143 aa16.78■□□□□ 0.28
SQSTM1-208ENST00000485412 ZBED9Q6R2W3 1325 aa16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 CYP2D7A0A087X1C5 515 aa16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 KBTBD13C9JR72 458 aa16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 MPHOSPH10O00566 681 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 GJC2Q5T442 439 aaPredicted RBP16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 LBX2Q6XYB7 198 aa16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 ARRDC4Q8NCT1 418 aa16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 CRNKL1Q9BZJ0 848 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 COG6Q9Y2V7 657 aa16.77■□□□□ 0.28
SQSTM1-208ENST00000485412 MYCNP04198 464 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-208ENST00000485412 CYBAP13498 195 aa16.76■□□□□ 0.27
SQSTM1-208ENST00000485412 SIAH1Q8IUQ4 282 aa16.76■□□□□ 0.27
SQSTM1-208ENST00000485412 PLXNA1Q9UIW2 1896 aa16.76■□□□□ 0.27
SQSTM1-208ENST00000485412 SMCHD1A6NHR9 2005 aa16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 IGHA2P01877 340 aa16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 TTF1Q15361 905 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 ANO1Q5XXA6 986 aa16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 SLC39A5Q6ZMH5 540 aa16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 KIF1BPQ96EK5 621 aa16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 CDX2Q99626 313 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 MOV10L1Q9BXT6 1211 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 BOLA2Q9H3K6 86 aa16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 ZBTB40Q9NUA8 1239 aa16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 EYSQ5T1H1 3165 aa16.75■□□□□ 0.27
SQSTM1-208ENST00000485412 GREB1LQ9C091 1923 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 MBD4O95243 580 aa16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 AKR1B1P15121 316 aa16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 ADORA2AP29274 412 aa16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 SHHQ15465 462 aa16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 OLFML2BQ68BL8 750 aa16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 SPICE1Q8N0Z3 855 aa16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 CLASRPQ8N2M8 674 aaKnown RBP16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 MAFAQ8NHW3 353 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 TANGO6Q9C0B7 1094 aa16.74■□□□□ 0.27
SQSTM1-208ENST00000485412 STRNO43815 780 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 COBLO75128 1261 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 IFIT2P09913 472 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 ADD2P35612 726 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 TRIM60Q495X7 471 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 HSP90AB4PQ58FF6 505 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 C9orf50Q5SZB4 431 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 TMED8Q6PL24 325 aaPredicted RBP16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 BADQ92934 168 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 SEMA6BQ9H3T3 888 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 PAG1Q9NWQ8 432 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 SLC5A4Q9NY91 659 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 HOXC10Q9NYD6 342 aa16.73■□□□□ 0.27
SQSTM1-208ENST00000485412 CDH23Q9H251 3354 aa16.72■□□□□ 0.27
SQSTM1-208ENST00000485412 SEPT4O43236 478 aa16.72■□□□□ 0.27
SQSTM1-208ENST00000485412 ERCC3P19447 782 aa16.72■□□□□ 0.27
SQSTM1-208ENST00000485412 COG2Q14746 738 aa16.72■□□□□ 0.27
SQSTM1-208ENST00000485412 DIEXFQ68CQ4 756 aaKnown RBP16.72■□□□□ 0.27
SQSTM1-208ENST00000485412 ATG4CQ96DT6 458 aa16.72■□□□□ 0.27
SQSTM1-208ENST00000485412 SPATC1LQ9H0A9 340 aa16.72■□□□□ 0.27
SQSTM1-208ENST00000485412 SMARCA5O60264 1052 aaPredicted RBP16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 PLS1Q14651 629 aa16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 C20orf194Q5TEA3 1177 aa16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 SAMD1Q6SPF0 538 aaPredicted RBP16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 TMEM179Q6ZVK1 233 aa16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 RPAP2Q8IXW5 612 aaPredicted RBP16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 SHCBP1Q8NEM2 672 aa16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 MYLIPQ8WY64 445 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms