RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 SULF1Q8IWU6 871 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 CCDC144CPQ8IYA2 1237 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 LRRC47Q8N1G4 583 aaKnown RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 HOOK2Q96ED9 719 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 CDCA5Q96FF9 252 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 GLIS2Q9BZE0 524 aaPredicted RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 RRAGCQ9HB90 399 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 CWC22Q9HCG8 908 aaKnown RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 NMRK2Q9NPI5 230 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 CLIP2Q9UDT6 1046 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 NAP1L2Q9ULW6 460 aaPredicted RBP9.63□□□□□ -0.87
USP4-210ENST00000483212 SYNPO2Q9UMS6 1093 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 DOCK1Q14185 1865 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 ATAD5Q96QE3 1844 aa9.63□□□□□ -0.87
USP4-210ENST00000483212 PALM3A6NDB9 673 aaPredicted RBP9.62□□□□□ -0.87
USP4-210ENST00000483212 CTNND1O60716 968 aaKnown RBP9.62□□□□□ -0.87
USP4-210ENST00000483212 USP2O75604 605 aaPredicted RBP9.62□□□□□ -0.87
USP4-210ENST00000483212 PLEKHA8P1O95397 391 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 HSP90AA1P07900 732 aaKnown RBP9.62□□□□□ -0.87
USP4-210ENST00000483212 PDHBP11177 359 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 IFNAR1P17181 557 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 GJB2P29033 226 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 INPP5BP32019 993 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 PKP1Q13835 747 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 PPP2R5BQ15173 497 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 SUPT20HL1Q3ZLR7 823 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 EAPPQ56P03 285 aaPredicted RBP9.62□□□□□ -0.87
USP4-210ENST00000483212 PPP4R3BQ5MIZ7 849 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 NOL9Q5SY16 702 aaKnown RBP9.62□□□□□ -0.87
USP4-210ENST00000483212 SYNE3Q6ZMZ3 975 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 TMTC3Q6ZXV5 915 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 CDC37L1Q7L3B6 337 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 USP48Q86UV5 1035 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.62□□□□□ -0.87
USP4-210ENST00000483212 NUP133Q8WUM0 1156 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 KLRG1Q96E93 195 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 CABP5Q9NP86 173 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 GINM1Q9NU53 330 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 MAD2L2Q9UI95 211 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 CIZ1Q9ULV3 898 aaPredicted RBP9.62□□□□□ -0.87
USP4-210ENST00000483212 FZD1Q9UP38 647 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 SMC3Q9UQE7 1217 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 POLR2AP24928 1970 aaKnown RBP9.62□□□□□ -0.87
USP4-210ENST00000483212 OTOFQ9HC10 1997 aa9.62□□□□□ -0.87
USP4-210ENST00000483212 CNTNAP5Q8WYK1 1306 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 STK36Q9NRP7 1315 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 UBE2Q2LH0YL09 131 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 DHX16O60231 1041 aaKnown RBP9.61□□□□□ -0.87
USP4-210ENST00000483212 FMNL1O95466 1100 aaPredicted RBP9.61□□□□□ -0.87
USP4-210ENST00000483212 ASNSP08243 561 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 ATXN8OSP0DMR3 200 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 ECE1P42892 770 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 MAP3K11Q16584 847 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 CCDC84Q86UT8 332 aaPredicted RBP9.61□□□□□ -0.87
USP4-210ENST00000483212 LDHDQ86WU2 507 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 SCYL3Q8IZE3 742 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 STAG2Q8N3U4 1231 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 SRBD1Q8N5C6 995 aaKnown RBP9.61□□□□□ -0.87
USP4-210ENST00000483212 GMCL1P1Q8NEA9 526 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 ACER1Q8TDN7 264 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 CHMP4CQ96CF2 233 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 WRNIP1Q96S55 665 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 RBM28Q9NW13 759 aaKnown RBP9.61□□□□□ -0.87
USP4-210ENST00000483212 CHMP5Q9NZZ3 219 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 TMX2Q9Y320 296 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 ZDHHC9Q9Y397 364 aa9.61□□□□□ -0.87
USP4-210ENST00000483212 MYH4Q9Y623 1939 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 CCDC196A0A1B0GTZ2 297 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 USP17L5A8MUK1 530 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 CYTH3O43739 400 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 PPFIA3O75145 1194 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 SYT1P21579 422 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 HMGN5P82970 282 aaKnown RBP9.6□□□□□ -0.87
USP4-210ENST00000483212 RAB3GAP1Q15042 981 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 KIAA1755Q5JYT7 1200 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 MAP1SQ66K74 1059 aaPredicted RBP9.6□□□□□ -0.87
USP4-210ENST00000483212 USP17L2Q6R6M4 530 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.6□□□□□ -0.87
USP4-210ENST00000483212 CMTR1Q8N1G2 835 aaKnown RBP9.6□□□□□ -0.87
USP4-210ENST00000483212 CTCFLQ8NI51 663 aaPredicted RBP9.6□□□□□ -0.87
USP4-210ENST00000483212 PHKBQ93100 1093 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 ZKSCAN4Q969J2 545 aaPredicted RBP9.6□□□□□ -0.87
USP4-210ENST00000483212 DDX11Q96FC9 970 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 GMCL1Q96IK5 515 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 SNCAIPQ9Y6H5 919 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 PHIPQ8WWQ0 1821 aa9.6□□□□□ -0.87
USP4-210ENST00000483212 F5H6K3 240 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 TRAF5O00463 557 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 CPLX1O14810 134 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 CDKL5O76039 1030 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 BRD1O95696 1058 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 NDUFB10O96000 172 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 GOLGA8HP0CJ92 632 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 PRKAR2AP13861 404 aaKnown RBP9.59□□□□□ -0.87
USP4-210ENST00000483212 PTPRAP18433 802 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 SMARCA1P28370 1054 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 KIF5BP33176 963 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 FMR1Q06787 632 aaKnown RBP eCLIP9.59□□□□□ -0.87
USP4-210ENST00000483212 KLRC3Q07444 240 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms