RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	GOPC	Q9HD26	462 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	STAP2	Q9UGK3	403 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	GABRQ	Q9UN88	632 aa		13.74	□□□□□ -0.21
CPNE1-222	ENST00000473373	ADCY3	O60266	1144 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	FLT3LG	P49771	235 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	NUCB1	Q02818	461 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	SBK1	Q52WX2	424 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	SPICE1	Q8N0Z3	855 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	SLAIN1	Q8ND83	568 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	C12orf42	Q96LP6	360 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	KANSL2	Q9H9L4	492 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	TOMM22	Q9NS69	142 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	PARP14	Q460N5	1801 aa		13.73	□□□□□ -0.21
CPNE1-222	ENST00000473373	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	SALL3	Q9BXA9	1300 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	SMIM22	K7EJ46	135 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	PRDM1	O75626	825 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	TSPY3	P0CV98	308 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	TSPY8	P0CW00	308 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	GUCY1A2	P33402	732 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	MFAP1	P55081	439 aa	Known RBP	13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	ERVK-9	P63128	1117 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	ERVK-24	P63145	666 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	PLS1	Q14651	629 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	CATSPERG	Q6ZRH7	1159 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	HELLS	Q9NRZ9	838 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	DIAPH3	Q9NSV4	1193 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	IVNS1ABP	Q9Y6Y0	642 aa		13.72	□□□□□ -0.21
CPNE1-222	ENST00000473373	GREB1L	Q9C091	1923 aa	Predicted RBP	13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	FLOT1	O75955	427 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	EEF2	P13639	858 aa	Known RBP	13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	ELN	P15502	786 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	MAPK4	P31152	587 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	PPARA	Q07869	468 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	MTFR1	Q15390	333 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	CHRDL2	Q6WN34	429 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	LPAR1	Q92633	364 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	DPF3	Q92784	378 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	NUDT12	Q9BQG2	462 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	RNF208	Q9H0X6	261 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373	MORF4L1	Q9UBU8	362 aa		13.71	□□□□□ -0.21
CPNE1-222	ENST00000473373		A0A1W2PRG0	241 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	PEX10	O60683	326 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	CYP2B6	P20813	491 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	NMI	Q13287	307 aa	Predicted RBP	13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	COG2	Q14746	738 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	MCMDC2	Q4G0Z9	681 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	PLEKHM2	Q8IWE5	1019 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	VCPKMT	Q9H867	229 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	HOXC10	Q9NYD6	342 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	TMX2	Q9Y320	296 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	RABGAP1	Q9Y3P9	1069 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	BRCA2	P51587	3418 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	ROBO3	Q96MS0	1386 aa		13.7	□□□□□ -0.22
CPNE1-222	ENST00000473373	TSPY2	A6NKD2	308 aa		13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	HIP1	O00291	1037 aa		13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	WDR46	O15213	610 aa	Known RBP	13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	CCL5	P13501	91 aa		13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	RASA1	P20936	1047 aa		13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	RRP12	Q5JTH9	1297 aa	Known RBP	13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	SOCS4	Q8WXH5	440 aa		13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	FAM227B	Q96M60	508 aa		13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	TXNRD2	Q9NNW7	524 aa		13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	RBPJL	Q9UBG7	517 aa		13.69	□□□□□ -0.22
CPNE1-222	ENST00000473373	PLXNA1	Q9UIW2	1896 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373		A0A0D9SFI3	127 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	RANBP6	O60518	1105 aa	Known RBP	13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	INHA	P05111	366 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	CTDSPL2	Q05D32	466 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	IK	Q13123	557 aa	Predicted RBP	13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	CWC27	Q6UX04	472 aa	Known RBP	13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	GPR142	Q7Z601	462 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	PLEKHH3	Q7Z736	793 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	NKX2-3	Q8TAU0	364 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	SHISA4	Q96DD7	197 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	CLIP2	Q9UDT6	1046 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	LAMA4	Q16363	1823 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373	RLF	Q13129	1914 aa		13.68	□□□□□ -0.22
CPNE1-222	ENST00000473373		A0A0G2JMZ2	1700 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	CCDC171	Q6TFL3	1326 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	SDS	P20132	328 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	RGS2	P41220	211 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	SLC4A3	P48751	1232 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	TFAP4	Q01664	338 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	IRF5	Q13568	498 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373		Q3C1V9	767 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	FAM47A	Q5JRC9	791 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	PPP4R3B	Q5MIZ7	849 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	FAM83B	Q5T0W9	1011 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	VPS53	Q5VIR6	699 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	NCAPG2	Q86XI2	1143 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	PXYLP1	Q8TE99	480 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	PORCN	Q9H237	461 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	RBM27	Q9P2N5	1060 aa	Known RBP	13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	MTMR7	Q9Y216	660 aa		13.67	□□□□□ -0.22
CPNE1-222	ENST00000473373	TTLL1	O95922	423 aa		13.66	□□□□□ -0.22
CPNE1-222	ENST00000473373	HMGCR	P04035	888 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms