RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 RNF208Q9H0X6 261 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 PORCNQ9H237 461 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 OSBPL3Q9H4L5 887 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 HELLSQ9NRZ9 838 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 INHAP05111 366 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 XRCC5P13010 732 aaKnown RBP14.27□□□□□ -0.13
SYNE1-221ENST00000472563 PLEKHH3Q7Z736 793 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 PLEKHM2Q8IWE5 1019 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 ZNF444Q8N0Y2 327 aaPredicted RBP14.27□□□□□ -0.13
SYNE1-221ENST00000472563 SOCS4Q8WXH5 440 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 NUDT12Q9BQG2 462 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 TANGO6Q9C0B7 1094 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 NAPBQ9H115 298 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 BTBD7Q9P203 1132 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 NYAP2Q9P242 653 aa14.27□□□□□ -0.13
SYNE1-221ENST00000472563 PTPRFP10586 1907 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 MYH1P12882 1939 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 WDR46O15213 610 aaKnown RBP14.26□□□□□ -0.13
SYNE1-221ENST00000472563 FOXP2O15409 715 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 SLC3A2P08195 630 aaKnown RBP14.26□□□□□ -0.13
SYNE1-221ENST00000472563 GJA8P48165 433 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 ATP2B2Q01814 1243 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 CCDC129Q6ZRS4 1044 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 GPR142Q7Z601 462 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 SPICE1Q8N0Z3 855 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 MB21D1Q8N884 522 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 USP6NLQ92738 828 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 UNC93B1Q9H1C4 597 aa14.26□□□□□ -0.13
SYNE1-221ENST00000472563 IGKV6D-41A0A0C4DH26 115 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 TRIM6-TRIM34B2RNG4 842 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 PRDM1O75626 825 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 HMGCRP04035 888 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 CAPN2P17655 700 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 DSG3P32926 999 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 PDE4BQ07343 736 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 PPARAQ07869 468 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 ALX1Q15699 326 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 MCMDC2Q4G0Z9 681 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 MORN1Q5T089 497 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 STK11IPQ8N1F8 1099 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 FAM227BQ96M60 508 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 GOPCQ9HD26 462 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 NAV1Q8NEY1 1877 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 TNRC18O15417 2968 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-221ENST00000472563 ZSWIM8A7E2V4 1837 aa14.25□□□□□ -0.13
SYNE1-221ENST00000472563 FLOT1O75955 427 aa14.24□□□□□ -0.13
SYNE1-221ENST00000472563 CYP2B6P20813 491 aa14.24□□□□□ -0.13
SYNE1-221ENST00000472563 RGS2P41220 211 aa14.24□□□□□ -0.13
SYNE1-221ENST00000472563 VPS53Q5VIR6 699 aa14.24□□□□□ -0.13
SYNE1-221ENST00000472563 TRMT44Q8IYL2 757 aaKnown RBP14.24□□□□□ -0.13
SYNE1-221ENST00000472563 NEDD1Q8NHV4 660 aa14.24□□□□□ -0.13
SYNE1-221ENST00000472563 U2AF1L4Q8WU68 220 aaKnown RBP14.24□□□□□ -0.13
SYNE1-221ENST00000472563 SHISA4Q96DD7 197 aa14.24□□□□□ -0.13
SYNE1-221ENST00000472563 CWC22Q9HCG8 908 aaKnown RBP14.24□□□□□ -0.13
SYNE1-221ENST00000472563 PAK6Q9NQU5 681 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-221ENST00000472563 SYNPO2Q9UMS6 1093 aa14.24□□□□□ -0.13
SYNE1-221ENST00000472563 ATAD5Q96QE3 1844 aa14.24□□□□□ -0.13
SYNE1-221ENST00000472563 A0A0D9SFI3 127 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 SLC15A5A6NIM6 579 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 SGPL1O95470 568 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 PTPREP23469 700 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 PRPF38BQ5VTL8 546 aaKnown RBP14.23□□□□□ -0.13
SYNE1-221ENST00000472563 SHCBP1Q8NEM2 672 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 TRIB2Q92519 343 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 MKL1Q969V6 931 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 RILPL2Q969X0 211 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 MOV10L1Q9BXT6 1211 aaKnown RBP14.23□□□□□ -0.13
SYNE1-221ENST00000472563 MTMR4Q9NYA4 1195 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 CLIP2Q9UDT6 1046 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 ANAPC4Q9UJX5 808 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 ADAMTS5Q9UNA0 930 aa14.23□□□□□ -0.13
SYNE1-221ENST00000472563 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.23□□□□□ -0.13
SYNE1-221ENST00000472563 KIAA0100Q14667 2235 aaKnown RBP14.23□□□□□ -0.13
SYNE1-221ENST00000472563 F5H6K3 240 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 HOXC6P09630 235 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 TSPY3P0CV98 308 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 TSPY8P0CW00 308 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 SDSP20132 328 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 TFAP4Q01664 338 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 KLRC3Q07444 240 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 MAP2K5Q13163 448 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 NMIQ13287 307 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-221ENST00000472563 MAP3K21Q5TCX8 1036 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 WDR78Q5VTH9 848 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 ATG4CQ96DT6 458 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 APBA2Q99767 749 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 SPATC1LQ9H0A9 340 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 IVNS1ABPQ9Y6Y0 642 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 PLIN4Q96Q06 1357 aa14.22□□□□□ -0.13
SYNE1-221ENST00000472563 RPTORQ8N122 1335 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 STRNO43815 780 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 RAD21O60216 631 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 TTLL1O95922 423 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 NDUFB10O96000 172 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 ZKSCAN1P17029 563 aaPredicted RBP14.21□□□□□ -0.13
SYNE1-221ENST00000472563 IRX6P78412 446 aaPredicted RBP14.21□□□□□ -0.13
SYNE1-221ENST00000472563 TRIM32Q13049 653 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 GRB14Q14449 540 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 PPP4R3BQ5MIZ7 849 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 FAM83BQ5T0W9 1011 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms