RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 GOLGA8HP0CJ92 632 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 TTC38Q5R3I4 469 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 FAM177A1Q8N128 213 aaPredicted RBP21.79■■□□□ 1.08
VIM-203ENST00000469543 CCDC150Q8NCX0 1101 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 RBM28Q9NW13 759 aaKnown RBP21.79■■□□□ 1.08
VIM-203ENST00000469543 SCN7AQ01118 1682 aa21.79■■□□□ 1.08
VIM-203ENST00000469543 SCG2P13521 617 aa21.78■■□□□ 1.08
VIM-203ENST00000469543 PPP2R5BQ15173 497 aa21.78■■□□□ 1.08
VIM-203ENST00000469543 RC3H1Q5TC82 1133 aaKnown RBP21.78■■□□□ 1.08
VIM-203ENST00000469543 MAPKAPK5Q8IW41 473 aa21.78■■□□□ 1.08
VIM-203ENST00000469543 FANCGO15287 622 aa21.78■■□□□ 1.08
VIM-203ENST00000469543 LDHBP07195 334 aaKnown RBP21.78■■□□□ 1.08
VIM-203ENST00000469543 SLC35G1Q2M3R5 365 aa21.78■■□□□ 1.08
VIM-203ENST00000469543 TMX1Q9H3N1 280 aa21.78■■□□□ 1.08
VIM-203ENST00000469543 PRDM10Q9NQV6 1147 aa21.78■■□□□ 1.08
VIM-203ENST00000469543 HOOK1Q9UJC3 728 aaKnown RBP21.78■■□□□ 1.08
VIM-203ENST00000469543 DDAH1O94760 285 aa21.77■■□□□ 1.08
VIM-203ENST00000469543 TRAPPC3LQ5T215 181 aa21.77■■□□□ 1.08
VIM-203ENST00000469543 MKRN1Q9UHC7 482 aaKnown RBP21.77■■□□□ 1.08
VIM-203ENST00000469543 FAM205AQ6ZU69 1335 aa21.77■■□□□ 1.08
VIM-203ENST00000469543 UBAP1LF5GYI3 381 aa21.77■■□□□ 1.08
VIM-203ENST00000469543 ZNF18P17022 549 aa21.77■■□□□ 1.08
VIM-203ENST00000469543 C12orf60Q5U649 245 aa21.77■■□□□ 1.08
VIM-203ENST00000469543 CCDC94Q9BW85 323 aaPredicted RBP21.77■■□□□ 1.08
VIM-203ENST00000469543 STX8Q9UNK0 236 aa21.77■■□□□ 1.08
VIM-203ENST00000469543 TEX33O43247 280 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 SPATA20Q8TB22 786 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 ARPP21Q9UBL0 812 aaPredicted RBP21.76■■□□□ 1.07
VIM-203ENST00000469543 CALM1P0DP23 149 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 CALM2P0DP24 149 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 CALM3P0DP25 149 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 MTERF4Q7Z6M4 381 aaKnown RBP21.76■■□□□ 1.07
VIM-203ENST00000469543 PNMA1Q8ND90 353 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 KIF18AQ8NI77 898 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 MTRQ99707 1265 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 MKNK2Q9HBH9 465 aa21.76■■□□□ 1.07
VIM-203ENST00000469543 SLFN14P0C7P3 912 aa21.75■■□□□ 1.07
VIM-203ENST00000469543 DPYDQ12882 1025 aa21.75■■□□□ 1.07
VIM-203ENST00000469543 HOMER1Q86YM7 354 aa21.75■■□□□ 1.07
VIM-203ENST00000469543 MLKLQ8NB16 471 aa21.75■■□□□ 1.07
VIM-203ENST00000469543 KAT14Q9H8E8 782 aa21.75■■□□□ 1.07
VIM-203ENST00000469543 MAPK8IP1Q9UQF2 711 aa21.75■■□□□ 1.07
VIM-203ENST00000469543 PFKFB3Q16875 520 aaPredicted RBP21.75■■□□□ 1.07
VIM-203ENST00000469543 CYTH3O43739 400 aa21.74■■□□□ 1.07
VIM-203ENST00000469543 GLIPR1L2Q4G1C9 344 aa21.74■■□□□ 1.07
VIM-203ENST00000469543 TMEM139Q8IV31 216 aa21.74■■□□□ 1.07
VIM-203ENST00000469543 CNBD1Q8NA66 436 aa21.74■■□□□ 1.07
VIM-203ENST00000469543 ENOX1Q8TC92 643 aaKnown RBP21.74■■□□□ 1.07
VIM-203ENST00000469543 CPLX3Q8WVH0 158 aa21.74■■□□□ 1.07
VIM-203ENST00000469543 PLIN2Q99541 437 aa21.74■■□□□ 1.07
VIM-203ENST00000469543 BRMS1Q9HCU9 246 aa21.74■■□□□ 1.07
VIM-203ENST00000469543 PP2D1A8MPX8 630 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 GPSM2P81274 684 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 SBK1Q52WX2 424 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 CREBRFQ8IUR6 639 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 CBFA2T2O43439 604 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 ATP2C1P98194 919 aaPredicted RBP21.73■■□□□ 1.07
VIM-203ENST00000469543 XDHP47989 1333 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.73■■□□□ 1.07
VIM-203ENST00000469543 PCP11498 1178 aaKnown RBP21.73■■□□□ 1.07
VIM-203ENST00000469543 GRAPQ13588 217 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 CUL4BQ13620 913 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 GRAPLQ8TC17 118 aaPredicted RBP21.73■■□□□ 1.07
VIM-203ENST00000469543 DNAI1Q9UI46 699 aa21.73■■□□□ 1.07
VIM-203ENST00000469543 TNRC6CQ9HCJ0 1690 aaKnown RBP21.72■■□□□ 1.07
VIM-203ENST00000469543 TSPY3P0CV98 308 aa21.72■■□□□ 1.07
VIM-203ENST00000469543 TSPY8P0CW00 308 aa21.72■■□□□ 1.07
VIM-203ENST00000469543 SH3RF1Q7Z6J0 888 aa21.72■■□□□ 1.07
VIM-203ENST00000469543 ELOA2Q8IYF1 753 aaPredicted RBP21.72■■□□□ 1.07
VIM-203ENST00000469543 TC2NQ8N9U0 490 aa21.72■■□□□ 1.07
VIM-203ENST00000469543 MAD2L2Q9UI95 211 aa21.72■■□□□ 1.07
VIM-203ENST00000469543 MTF1Q14872 753 aa21.72■■□□□ 1.07
VIM-203ENST00000469543 PRR5LQ6MZQ0 368 aa21.72■■□□□ 1.07
VIM-203ENST00000469543 FNBP4Q8N3X1 1017 aaPredicted RBP21.72■■□□□ 1.07
VIM-203ENST00000469543 DESI2Q9BSY9 194 aa21.72■■□□□ 1.07
VIM-203ENST00000469543 BTAF1O14981 1849 aa21.71■■□□□ 1.07
VIM-203ENST00000469543 ELF2Q15723 593 aa21.71■■□□□ 1.07
VIM-203ENST00000469543 TOGARAM2Q6ZUX3 1019 aa21.71■■□□□ 1.07
VIM-203ENST00000469543 KCND1Q9NSA2 647 aa21.71■■□□□ 1.07
VIM-203ENST00000469543 KANK3Q6NY19 840 aa21.71■■□□□ 1.07
VIM-203ENST00000469543 FERMT2Q96AC1 680 aa21.71■■□□□ 1.07
VIM-203ENST00000469543 PSDA5PKW4 1024 aaPredicted RBP21.7■■□□□ 1.06
VIM-203ENST00000469543 PPP1R3GB7ZBB8 358 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 KARSQ15046 597 aaKnown RBP21.7■■□□□ 1.06
VIM-203ENST00000469543 SPECC1LQ69YQ0 1117 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 APTXQ7Z2E3 356 aaKnown RBP21.7■■□□□ 1.06
VIM-203ENST00000469543 HEATR3Q7Z4Q2 680 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 REXO1L1PQ8IX06 675 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 A0A0U1RQJ8 604 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 UFL1O94874 794 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 TBX2Q13207 712 aaPredicted RBP21.7■■□□□ 1.06
VIM-203ENST00000469543 NR1I3Q14994 352 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 E2F4Q16254 413 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 TRIM65Q6PJ69 517 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 BLIDQ8IZY5 108 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 ATRIPQ8WXE1 791 aa21.7■■□□□ 1.06
VIM-203ENST00000469543 INF2Q27J81 1249 aa21.69■■□□□ 1.06
VIM-203ENST00000469543 SPTY2D1Q68D10 685 aaPredicted RBP21.69■■□□□ 1.06
VIM-203ENST00000469543 ZNF444Q8N0Y2 327 aaPredicted RBP21.69■■□□□ 1.06
VIM-203ENST00000469543 WDR66Q8TBY9 1149 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms