RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 ZMYND8Q9ULU4 1186 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-207ENST00000467819 IVNS1ABPQ9Y6Y0 642 aa25.42■■□□□ 1.66
COL9A3-207ENST00000467819 SLC15A5A6NIM6 579 aa25.41■■□□□ 1.66
COL9A3-207ENST00000467819 PTPREP23469 700 aa25.41■■□□□ 1.66
COL9A3-207ENST00000467819 TMEM179Q6ZVK1 233 aa25.41■■□□□ 1.66
COL9A3-207ENST00000467819 CLEC10AQ8IUN9 316 aa25.41■■□□□ 1.66
COL9A3-207ENST00000467819 ATP8A2Q9NTI2 1148 aa25.41■■□□□ 1.66
COL9A3-207ENST00000467819 CYP2D7A0A087X1C5 515 aa25.4■■□□□ 1.66
COL9A3-207ENST00000467819 SMARCA5O60264 1052 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-207ENST00000467819 LRRCC1Q9C099 1032 aa25.4■■□□□ 1.66
COL9A3-207ENST00000467819 FLRT1Q9NZU1 646 aa25.4■■□□□ 1.66
COL9A3-207ENST00000467819 COL11A1P12107 1806 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-207ENST00000467819 PFASO15067 1338 aa25.39■■□□□ 1.66
COL9A3-207ENST00000467819 LAMA3Q16787 3333 aa25.39■■□□□ 1.66
COL9A3-207ENST00000467819 SMIM22K7EJ46 135 aa25.39■■□□□ 1.66
COL9A3-207ENST00000467819 AKR1B1P15121 316 aa25.39■■□□□ 1.66
COL9A3-207ENST00000467819 COG2Q14746 738 aa25.39■■□□□ 1.66
COL9A3-207ENST00000467819 KIAA1755Q5JYT7 1200 aa25.39■■□□□ 1.66
COL9A3-207ENST00000467819 MFSD14CQ5VZR4 134 aa25.39■■□□□ 1.66
COL9A3-207ENST00000467819 LHX8Q68G74 356 aa25.39■■□□□ 1.66
COL9A3-207ENST00000467819 ZNF236Q9UL36 1845 aa25.39■■□□□ 1.65
COL9A3-207ENST00000467819 GRB14Q14449 540 aa25.38■■□□□ 1.65
COL9A3-207ENST00000467819 AMOTL1Q8IY63 956 aa25.38■■□□□ 1.65
COL9A3-207ENST00000467819 ARHGEF10LQ9HCE6 1279 aa25.38■■□□□ 1.65
COL9A3-207ENST00000467819 A0A1W2PPC1 479 aa25.37■■□□□ 1.65
COL9A3-207ENST00000467819 SYN1P17600 705 aa25.37■■□□□ 1.65
COL9A3-207ENST00000467819 ATP2B2Q01814 1243 aa25.37■■□□□ 1.65
COL9A3-207ENST00000467819 ICA1Q05084 483 aa25.37■■□□□ 1.65
COL9A3-207ENST00000467819 UBE3CQ15386 1083 aa25.37■■□□□ 1.65
COL9A3-207ENST00000467819 NPLOC4Q8TAT6 608 aa25.37■■□□□ 1.65
COL9A3-207ENST00000467819 MOV10L1Q9BXT6 1211 aaKnown RBP25.37■■□□□ 1.65
COL9A3-207ENST00000467819 HOXC10Q9NYD6 342 aa25.37■■□□□ 1.65
COL9A3-207ENST00000467819 SLC4A4Q9Y6R1 1079 aa25.37■■□□□ 1.65
COL9A3-207ENST00000467819 ZNFX1Q9P2E3 1918 aaKnown RBP25.37■■□□□ 1.65
COL9A3-207ENST00000467819 USP17L12C9JPN9 530 aa25.36■■□□□ 1.65
COL9A3-207ENST00000467819 USP17L21D6R901 530 aa25.36■■□□□ 1.65
COL9A3-207ENST00000467819 CDK8P49336 464 aa25.36■■□□□ 1.65
COL9A3-207ENST00000467819 C12orf60Q5U649 245 aa25.36■■□□□ 1.65
COL9A3-207ENST00000467819 SPICE1Q8N0Z3 855 aa25.36■■□□□ 1.65
COL9A3-207ENST00000467819 DDRGK1Q96HY6 314 aa25.36■■□□□ 1.65
COL9A3-207ENST00000467819 HOXC6P09630 235 aa25.35■■□□□ 1.65
COL9A3-207ENST00000467819 CNGA1P29973 690 aa25.35■■□□□ 1.65
COL9A3-207ENST00000467819 ZSCAN25Q6NSZ9 544 aa25.35■■□□□ 1.65
COL9A3-207ENST00000467819 SAMD1Q6SPF0 538 aaPredicted RBP25.35■■□□□ 1.65
COL9A3-207ENST00000467819 SIAH1Q8IUQ4 282 aa25.35■■□□□ 1.65
COL9A3-207ENST00000467819 SPATC1LQ9H0A9 340 aa25.35■■□□□ 1.65
COL9A3-207ENST00000467819 SH2D4AQ9H788 454 aa25.35■■□□□ 1.65
COL9A3-207ENST00000467819 TMX2Q9Y320 296 aa25.35■■□□□ 1.65
COL9A3-207ENST00000467819 FLOT1O75955 427 aa25.34■■□□□ 1.65
COL9A3-207ENST00000467819 COL6A1P12109 1028 aa25.34■■□□□ 1.65
COL9A3-207ENST00000467819 CYP2C19P33261 490 aa25.34■■□□□ 1.65
COL9A3-207ENST00000467819 C16orf86Q6ZW13 317 aa25.34■■□□□ 1.65
COL9A3-207ENST00000467819 LPAR1Q92633 364 aa25.34■■□□□ 1.65
COL9A3-207ENST00000467819 CCDC17Q96LX7 622 aa25.34■■□□□ 1.65
COL9A3-207ENST00000467819 GDF15Q99988 308 aa25.34■■□□□ 1.65
COL9A3-207ENST00000467819 PUS7LQ9H0K6 701 aaKnown RBP25.34■■□□□ 1.65
COL9A3-207ENST00000467819 VCPKMTQ9H867 229 aa25.34■■□□□ 1.65
COL9A3-207ENST00000467819 SOX1O00570 391 aaPredicted RBP25.33■■□□□ 1.65
COL9A3-207ENST00000467819 ADORA2AP29274 412 aa25.33■■□□□ 1.65
COL9A3-207ENST00000467819 DSG3P32926 999 aa25.33■■□□□ 1.65
COL9A3-207ENST00000467819 PLS1Q14651 629 aa25.33■■□□□ 1.65
COL9A3-207ENST00000467819 DPP9Q86TI2 863 aa25.33■■□□□ 1.65
COL9A3-207ENST00000467819 ATG4CQ96DT6 458 aa25.33■■□□□ 1.65
COL9A3-207ENST00000467819 ERCC3P19447 782 aa25.32■■□□□ 1.64
COL9A3-207ENST00000467819 MB21D1Q8N884 522 aa25.32■■□□□ 1.64
COL9A3-207ENST00000467819 DDX20Q9UHI6 824 aaKnown RBP25.32■■□□□ 1.64
COL9A3-207ENST00000467819 GREB1LQ9C091 1923 aaPredicted RBP25.31■■□□□ 1.64
COL9A3-207ENST00000467819 MAGEA10P43363 369 aaPredicted RBP25.31■■□□□ 1.64
COL9A3-207ENST00000467819 LRRC26Q2I0M4 334 aa25.31■■□□□ 1.64
COL9A3-207ENST00000467819 CTR9Q6PD62 1173 aa25.31■■□□□ 1.64
COL9A3-207ENST00000467819 SHCBP1Q8NEM2 672 aa25.31■■□□□ 1.64
COL9A3-207ENST00000467819 LRCH3Q96II8 777 aa25.31■■□□□ 1.64
COL9A3-207ENST00000467819 ECHDC1Q9NTX5 307 aa25.31■■□□□ 1.64
COL9A3-207ENST00000467819 DNAH12Q6ZR08 3092 aa25.31■■□□□ 1.64
COL9A3-207ENST00000467819 PLXNA1Q9UIW2 1896 aa25.3■■□□□ 1.64
COL9A3-207ENST00000467819 WDR46O15213 610 aaKnown RBP25.3■■□□□ 1.64
COL9A3-207ENST00000467819 STRNO43815 780 aa25.3■■□□□ 1.64
COL9A3-207ENST00000467819 EEF2P13639 858 aaKnown RBP25.3■■□□□ 1.64
COL9A3-207ENST00000467819 BMP8BP34820 402 aa25.3■■□□□ 1.64
COL9A3-207ENST00000467819 NCAPG2Q86XI2 1143 aa25.3■■□□□ 1.64
COL9A3-207ENST00000467819 TRPV1Q8NER1 839 aa25.3■■□□□ 1.64
COL9A3-207ENST00000467819 MSCO60682 206 aa25.29■■□□□ 1.64
COL9A3-207ENST00000467819 TSHZ3Q63HK5 1081 aa25.29■■□□□ 1.64
COL9A3-207ENST00000467819 ARPP21Q9UBL0 812 aaPredicted RBP25.29■■□□□ 1.64
COL9A3-207ENST00000467819 MYH4Q9Y623 1939 aa25.29■■□□□ 1.64
COL9A3-207ENST00000467819 RAD21O60216 631 aa25.28■■□□□ 1.64
COL9A3-207ENST00000467819 CYBAP13498 195 aa25.28■■□□□ 1.64
COL9A3-207ENST00000467819 STK11IPQ8N1F8 1099 aa25.28■■□□□ 1.64
COL9A3-207ENST00000467819 SENP6Q9GZR1 1112 aaPredicted RBP25.28■■□□□ 1.64
COL9A3-207ENST00000467819 MROH8Q9H579 483 aa25.28■■□□□ 1.64
COL9A3-207ENST00000467819 COBLO75128 1261 aa25.27■■□□□ 1.64
COL9A3-207ENST00000467819 OLFML2BQ68BL8 750 aa25.27■■□□□ 1.64
COL9A3-207ENST00000467819 KBTBD3Q8NAB2 608 aa25.27■■□□□ 1.64
COL9A3-207ENST00000467819 GPATCH3Q96I76 525 aa25.27■■□□□ 1.64
COL9A3-207ENST00000467819 STRBPQ96SI9 672 aaKnown RBP25.27■■□□□ 1.64
COL9A3-207ENST00000467819 KANSL2Q9H9L4 492 aa25.27■■□□□ 1.64
COL9A3-207ENST00000467819 FBXO28Q9NVF7 368 aa25.27■■□□□ 1.64
COL9A3-207ENST00000467819 IGHA2P01877 340 aa25.26■■□□□ 1.63
COL9A3-207ENST00000467819 TMEM132BQ14DG7 1078 aa25.26■■□□□ 1.63
COL9A3-207ENST00000467819 DCTPP1Q9H773 170 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms