RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 SIAH1Q8IUQ4 282 aa24.95■■□□□ 1.58
COL6A1-203ENST00000466285 GTF3C2Q8WUA4 911 aaPredicted RBP24.95■■□□□ 1.58
COL6A1-203ENST00000466285 PAG1Q9NWQ8 432 aa24.95■■□□□ 1.58
COL6A1-203ENST00000466285 USP14P54578 494 aa24.94■■□□□ 1.58
COL6A1-203ENST00000466285 TRPV1Q8NER1 839 aa24.94■■□□□ 1.58
COL6A1-203ENST00000466285 GDF15Q99988 308 aa24.94■■□□□ 1.58
COL6A1-203ENST00000466285 CABP5Q9NP86 173 aa24.94■■□□□ 1.58
COL6A1-203ENST00000466285 PTPREP23469 700 aa24.93■■□□□ 1.58
COL6A1-203ENST00000466285 GRB14Q14449 540 aa24.93■■□□□ 1.58
COL6A1-203ENST00000466285 TMED8Q6PL24 325 aaPredicted RBP24.93■■□□□ 1.58
COL6A1-203ENST00000466285 CCAR1Q8IX12 1150 aaKnown RBP24.93■■□□□ 1.58
COL6A1-203ENST00000466285 LRRC26Q2I0M4 334 aa24.92■■□□□ 1.58
COL6A1-203ENST00000466285 LTBP2Q14767 1821 aa24.91■■□□□ 1.58
COL6A1-203ENST00000466285 IGHA2P01877 340 aa24.91■■□□□ 1.58
COL6A1-203ENST00000466285 ATP5JP18859 108 aa24.91■■□□□ 1.58
COL6A1-203ENST00000466285 CYP2C19P33261 490 aa24.91■■□□□ 1.58
COL6A1-203ENST00000466285 SPICE1Q8N0Z3 855 aa24.91■■□□□ 1.58
COL6A1-203ENST00000466285 HAUS7Q99871 368 aa24.91■■□□□ 1.58
COL6A1-203ENST00000466285 MOV10L1Q9BXT6 1211 aaKnown RBP24.91■■□□□ 1.58
COL6A1-203ENST00000466285 CWC22Q9HCG8 908 aaKnown RBP24.91■■□□□ 1.58
COL6A1-203ENST00000466285 ZNFX1Q9P2E3 1918 aaKnown RBP24.9■■□□□ 1.58
COL6A1-203ENST00000466285 SLC15A5A6NIM6 579 aa24.9■■□□□ 1.58
COL6A1-203ENST00000466285 HMMRO75330 724 aa24.9■■□□□ 1.58
COL6A1-203ENST00000466285 CAPN2P17655 700 aa24.9■■□□□ 1.58
COL6A1-203ENST00000466285 MAGEA10P43363 369 aaPredicted RBP24.9■■□□□ 1.58
COL6A1-203ENST00000466285 TANGO6Q9C0B7 1094 aa24.9■■□□□ 1.58
COL6A1-203ENST00000466285 RCAN3Q9UKA8 241 aa24.9■■□□□ 1.58
COL6A1-203ENST00000466285 RAB11FIP3O75154 756 aa24.89■■□□□ 1.58
COL6A1-203ENST00000466285 TSHZ3Q63HK5 1081 aa24.89■■□□□ 1.58
COL6A1-203ENST00000466285 TRMT44Q8IYL2 757 aaKnown RBP24.89■■□□□ 1.58
COL6A1-203ENST00000466285 PLXNA1Q9UIW2 1896 aa24.89■■□□□ 1.57
COL6A1-203ENST00000466285 CCNA1P78396 465 aa24.88■■□□□ 1.57
COL6A1-203ENST00000466285 TMEM179Q6ZVK1 233 aa24.88■■□□□ 1.57
COL6A1-203ENST00000466285 ATG4CQ96DT6 458 aa24.88■■□□□ 1.57
COL6A1-203ENST00000466285 PUS7LQ9H0K6 701 aaKnown RBP24.88■■□□□ 1.57
COL6A1-203ENST00000466285 HOXC6P09630 235 aa24.87■■□□□ 1.57
COL6A1-203ENST00000466285 MS4A1P11836 297 aa24.87■■□□□ 1.57
COL6A1-203ENST00000466285 ICA1Q05084 483 aa24.87■■□□□ 1.57
COL6A1-203ENST00000466285 C12orf60Q5U649 245 aa24.87■■□□□ 1.57
COL6A1-203ENST00000466285 A0A1W2PPC1 479 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 USP17L12C9JPN9 530 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 USP17L21D6R901 530 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 COBLO75128 1261 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 CYBAP13498 195 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 ADORA2AP29274 412 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 CDK8P49336 464 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 SPATC1LQ9H0A9 340 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 FBXO28Q9NVF7 368 aa24.86■■□□□ 1.57
COL6A1-203ENST00000466285 LAMA2P24043 3122 aaKnown RBP24.86■■□□□ 1.57
COL6A1-203ENST00000466285 ERCC3P19447 782 aa24.85■■□□□ 1.57
COL6A1-203ENST00000466285 COG2Q14746 738 aa24.85■■□□□ 1.57
COL6A1-203ENST00000466285 ANO1Q5XXA6 986 aa24.85■■□□□ 1.57
COL6A1-203ENST00000466285 SAMD1Q6SPF0 538 aaPredicted RBP24.85■■□□□ 1.57
COL6A1-203ENST00000466285 SWAP70Q9UH65 585 aa24.85■■□□□ 1.57
COL6A1-203ENST00000466285 DDX20Q9UHI6 824 aaKnown RBP24.85■■□□□ 1.57
COL6A1-203ENST00000466285 BMP8BP34820 402 aa24.84■■□□□ 1.57
COL6A1-203ENST00000466285 MFSD14CQ5VZR4 134 aa24.84■■□□□ 1.57
COL6A1-203ENST00000466285 C16orf86Q6ZW13 317 aa24.84■■□□□ 1.57
COL6A1-203ENST00000466285 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.84■■□□□ 1.57
COL6A1-203ENST00000466285 VCPKMTQ9H867 229 aa24.84■■□□□ 1.57
COL6A1-203ENST00000466285 TMX2Q9Y320 296 aa24.84■■□□□ 1.57
COL6A1-203ENST00000466285 SLC4A4Q9Y6R1 1079 aa24.84■■□□□ 1.57
COL6A1-203ENST00000466285 IVNS1ABPQ9Y6Y0 642 aa24.84■■□□□ 1.57
COL6A1-203ENST00000466285 MYH4Q9Y623 1939 aa24.84■■□□□ 1.57
COL6A1-203ENST00000466285 FLOT1O75955 427 aa24.83■■□□□ 1.57
COL6A1-203ENST00000466285 DSG3P32926 999 aa24.83■■□□□ 1.57
COL6A1-203ENST00000466285 ATP2B2Q01814 1243 aa24.83■■□□□ 1.57
COL6A1-203ENST00000466285 UBE3CQ15386 1083 aa24.83■■□□□ 1.57
COL6A1-203ENST00000466285 CTR9Q6PD62 1173 aa24.83■■□□□ 1.57
COL6A1-203ENST00000466285 LRRCC1Q9C099 1032 aa24.83■■□□□ 1.57
COL6A1-203ENST00000466285 ATP8A2Q9NTI2 1148 aa24.83■■□□□ 1.57
COL6A1-203ENST00000466285 GLRX3O76003 335 aaKnown RBP24.82■■□□□ 1.56
COL6A1-203ENST00000466285 EEF2P13639 858 aaKnown RBP24.82■■□□□ 1.56
COL6A1-203ENST00000466285 CNGA1P29973 690 aa24.82■■□□□ 1.56
COL6A1-203ENST00000466285 Q7L0L9 218 aa24.82■■□□□ 1.56
COL6A1-203ENST00000466285 SMCHD1A6NHR9 2005 aa24.81■■□□□ 1.56
COL6A1-203ENST00000466285 ATN1P54259 1190 aaPredicted RBP24.81■■□□□ 1.56
COL6A1-203ENST00000466285 MDM2Q00987 491 aaPredicted RBP24.81■■□□□ 1.56
COL6A1-203ENST00000466285 PLS1Q14651 629 aa24.81■■□□□ 1.56
COL6A1-203ENST00000466285 TMEM132BQ14DG7 1078 aa24.81■■□□□ 1.56
COL6A1-203ENST00000466285 PRAMEF19Q5SWL8 479 aa24.81■■□□□ 1.56
COL6A1-203ENST00000466285 STK11IPQ8N1F8 1099 aa24.81■■□□□ 1.56
COL6A1-203ENST00000466285 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.81■■□□□ 1.56
COL6A1-203ENST00000466285 SENP6Q9GZR1 1112 aaPredicted RBP24.8■■□□□ 1.56
COL6A1-203ENST00000466285 ARHGEF10LQ9HCE6 1279 aa24.8■■□□□ 1.56
COL6A1-203ENST00000466285 EPB41L4AQ9HCS5 686 aaPredicted RBP24.8■■□□□ 1.56
COL6A1-203ENST00000466285 GJC2Q5T442 439 aaPredicted RBP24.79■■□□□ 1.56
COL6A1-203ENST00000466285 NCAPG2Q86XI2 1143 aa24.79■■□□□ 1.56
COL6A1-203ENST00000466285 SHCBP1Q8NEM2 672 aa24.79■■□□□ 1.56
COL6A1-203ENST00000466285 LPAR1Q92633 364 aa24.79■■□□□ 1.56
COL6A1-203ENST00000466285 NUP88Q99567 741 aaPredicted RBP24.79■■□□□ 1.56
COL6A1-203ENST00000466285 WDR46O15213 610 aaKnown RBP24.78■■□□□ 1.56
COL6A1-203ENST00000466285 OLFML2BQ68BL8 750 aa24.78■■□□□ 1.56
COL6A1-203ENST00000466285 DPP9Q86TI2 863 aa24.78■■□□□ 1.56
COL6A1-203ENST00000466285 TDHQ8IZJ6 230 aa24.78■■□□□ 1.56
COL6A1-203ENST00000466285 OSBP2Q969R2 916 aa24.78■■□□□ 1.56
COL6A1-203ENST00000466285 STRBPQ96SI9 672 aaKnown RBP24.78■■□□□ 1.56
COL6A1-203ENST00000466285 HOXC10Q9NYD6 342 aa24.78■■□□□ 1.56
COL6A1-203ENST00000466285 GSG1L2A8MUP6 293 aa24.77■■□□□ 1.56
COL6A1-203ENST00000466285 FAM83BQ5T0W9 1011 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms