RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CAPN2P17655 700 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 ZMYM1Q5SVZ6 1142 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 CLEC10AQ8IUN9 316 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 SMC5Q8IY18 1101 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 SOCS4Q8WXH5 440 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 PAGR1Q9BTK6 254 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 UNC93B1Q9H1C4 597 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 PORCNQ9H237 461 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 PLXNA1Q9UIW2 1896 aa14.42□□□□□ -0.1
USP40-210ENST00000454354 HMGCRP04035 888 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 XRCC5P13010 732 aaKnown RBP14.41□□□□□ -0.1
USP40-210ENST00000454354 PDE1AP54750 535 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 CCNA1P78396 465 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 KIAA1755Q5JYT7 1200 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 GPR142Q7Z601 462 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 TICAM2Q86XR7 235 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 USP6NLQ92738 828 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 NUDT12Q9BQG2 462 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 VCPKMTQ9H867 229 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 KANSL2Q9H9L4 492 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 PAK6Q9NQU5 681 aaPredicted RBP14.41□□□□□ -0.1
USP40-210ENST00000454354 LAMA4Q16363 1823 aa14.41□□□□□ -0.1
USP40-210ENST00000454354 PLIN4Q96Q06 1357 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 PATL2C9JE40 543 aaKnown RBP14.4□□□□□ -0.1
USP40-210ENST00000454354 WDR46O15213 610 aaKnown RBP14.4□□□□□ -0.1
USP40-210ENST00000454354 RASA1P20936 1047 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 TDO2P48775 406 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 COG2Q14746 738 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 MORN1Q5T089 497 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 PLEKHH3Q7Z736 793 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 UBE2Q1Q7Z7E8 422 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 IFNL3Q8IZI9 196 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 U2AF1L4Q8WU68 220 aaKnown RBP14.4□□□□□ -0.1
USP40-210ENST00000454354 TRIB2Q92519 343 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 EVI5LQ96CN4 794 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 SEC62Q99442 399 aaKnown RBP14.4□□□□□ -0.1
USP40-210ENST00000454354 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.4□□□□□ -0.1
USP40-210ENST00000454354 RWDD1Q9H446 243 aaPredicted RBP14.4□□□□□ -0.1
USP40-210ENST00000454354 BTBD7Q9P203 1132 aa14.4□□□□□ -0.1
USP40-210ENST00000454354 MINDY4BA8MYZ0 360 aa14.39□□□□□ -0.11
USP40-210ENST00000454354 SGPL1O95470 568 aa14.39□□□□□ -0.11
USP40-210ENST00000454354 EEF2P13639 858 aaKnown RBP14.39□□□□□ -0.11
USP40-210ENST00000454354 TRMT44Q8IYL2 757 aaKnown RBP14.39□□□□□ -0.11
USP40-210ENST00000454354 EXOC6Q8TAG9 804 aa14.39□□□□□ -0.11
USP40-210ENST00000454354 NACAP1Q9BZK3 213 aa14.39□□□□□ -0.11
USP40-210ENST00000454354 TANGO6Q9C0B7 1094 aa14.39□□□□□ -0.11
USP40-210ENST00000454354 HOXC10Q9NYD6 342 aa14.39□□□□□ -0.11
USP40-210ENST00000454354 FOXP2O15409 715 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 APPP05067 770 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 CYP2B6P20813 491 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 DSG3P32926 999 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 RGS2P41220 211 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 MAP3K21Q5TCX8 1036 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 CCAR1Q8IX12 1150 aaKnown RBP14.38□□□□□ -0.11
USP40-210ENST00000454354 MB21D1Q8N884 522 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 APBA2Q99767 749 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 LNPKQ9C0E8 428 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 CRISPLD2Q9H0B8 497 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP40-210ENST00000454354 MKNK2Q9HBH9 465 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 ZNF287Q9HBT7 754 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 RPTORQ8N122 1335 aa14.38□□□□□ -0.11
USP40-210ENST00000454354 IGKV6D-41A0A0C4DH26 115 aa14.37□□□□□ -0.11
USP40-210ENST00000454354 SLC15A5A6NIM6 579 aa14.37□□□□□ -0.11
USP40-210ENST00000454354 IGHDP01880 384 aa14.37□□□□□ -0.11
USP40-210ENST00000454354 SPICE1Q8N0Z3 855 aa14.37□□□□□ -0.11
USP40-210ENST00000454354 SHCBP1Q8NEM2 672 aa14.37□□□□□ -0.11
USP40-210ENST00000454354 NAPBQ9H115 298 aa14.37□□□□□ -0.11
USP40-210ENST00000454354 GOPCQ9HD26 462 aa14.37□□□□□ -0.11
USP40-210ENST00000454354 NYAP2Q9P242 653 aa14.37□□□□□ -0.11
USP40-210ENST00000454354 FLOT1O75955 427 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 HOXC6P09630 235 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 ZKSCAN1P17029 563 aaPredicted RBP14.36□□□□□ -0.11
USP40-210ENST00000454354 PTPREP23469 700 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 NUCB1Q02818 461 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 TRIM32Q13049 653 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 MAP2K5Q13163 448 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 GRB14Q14449 540 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 DEFB118Q96PH6 123 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 MOV10L1Q9BXT6 1211 aaKnown RBP14.36□□□□□ -0.11
USP40-210ENST00000454354 SPATC1LQ9H0A9 340 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 OSBPL3Q9H4L5 887 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 HELLSQ9NRZ9 838 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 ADAMTS5Q9UNA0 930 aa14.36□□□□□ -0.11
USP40-210ENST00000454354 PRDM1O75626 825 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 FARP2O94887 1054 aaPredicted RBP14.35□□□□□ -0.11
USP40-210ENST00000454354 PRKAR2AP13861 404 aaKnown RBP14.35□□□□□ -0.11
USP40-210ENST00000454354 ATP2B2Q01814 1243 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 PDE4BQ07343 736 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 PPARAQ07869 468 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 CCDC129Q6ZRS4 1044 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 CHD1LQ86WJ1 897 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 STK11IPQ8N1F8 1099 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 ATG4CQ96DT6 458 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 CWC22Q9HCG8 908 aaKnown RBP14.35□□□□□ -0.11
USP40-210ENST00000454354 HMX1Q9NP08 348 aaPredicted RBP14.35□□□□□ -0.11
USP40-210ENST00000454354 SYNPO2Q9UMS6 1093 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 SUPT16HQ9Y5B9 1047 aaKnown RBP14.35□□□□□ -0.11
USP40-210ENST00000454354 IVNS1ABPQ9Y6Y0 642 aa14.35□□□□□ -0.11
USP40-210ENST00000454354 A0A0D9SFI3 127 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms