RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 ICA1Q05084 483 aa20.33■□□□□ 0.85
PRPF40A-204ENST00000450303 BMP2KLQ5H9B9 411 aa20.33■□□□□ 0.85
PRPF40A-204ENST00000450303 CCAR1Q8IX12 1150 aaKnown RBP20.33■□□□□ 0.85
PRPF40A-204ENST00000450303 GTF3C2Q8WUA4 911 aaPredicted RBP20.33■□□□□ 0.85
PRPF40A-204ENST00000450303 SHISA4Q96DD7 197 aa20.33■□□□□ 0.85
PRPF40A-204ENST00000450303 CCDC17Q96LX7 622 aa20.33■□□□□ 0.85
PRPF40A-204ENST00000450303 EPB41L4AQ9HCS5 686 aaPredicted RBP20.33■□□□□ 0.85
PRPF40A-204ENST00000450303 GJB1P08034 283 aa20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 LRRFIP1Q32MZ4 808 aaKnown RBP20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 SBK1Q52WX2 424 aa20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 SPICE1Q8N0Z3 855 aa20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 RILPL2Q969X0 211 aa20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 EVI5LQ96CN4 794 aa20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 ARHGEF10LQ9HCE6 1279 aa20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 BTBD7Q9P203 1132 aa20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 RABGAP1Q9Y3P9 1069 aa20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 RBM19Q9Y4C8 960 aaKnown RBP20.32■□□□□ 0.84
PRPF40A-204ENST00000450303 TDO2P48775 406 aa20.31■□□□□ 0.84
PRPF40A-204ENST00000450303 TRIM32Q13049 653 aa20.31■□□□□ 0.84
PRPF40A-204ENST00000450303 PRPF38BQ5VTL8 546 aaKnown RBP20.31■□□□□ 0.84
PRPF40A-204ENST00000450303 GIMAP6Q6P9H5 292 aa20.31■□□□□ 0.84
PRPF40A-204ENST00000450303 TANGO6Q9C0B7 1094 aa20.31■□□□□ 0.84
PRPF40A-204ENST00000450303 SPDYE16A6NNV3 312 aaPredicted RBP20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 PATL2C9JE40 543 aaKnown RBP20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 EEF2P13639 858 aaKnown RBP20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 GNAT2P19087 354 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 MAPK4P31152 587 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 GJA8P48165 433 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 ZMYM1Q5SVZ6 1142 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 WDR78Q5VTH9 848 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 SAMD1Q6SPF0 538 aaPredicted RBP20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 GPR142Q7Z601 462 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 IFNL3Q8IZI9 196 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 NUDT12Q9BQG2 462 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 MKNK2Q9HBH9 465 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 CWC22Q9HCG8 908 aaKnown RBP20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 TMX2Q9Y320 296 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 BRCA2P51587 3418 aa20.3■□□□□ 0.84
PRPF40A-204ENST00000450303 GSPT1P15170 499 aaKnown RBP20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 COG2Q14746 738 aa20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 CCDC129Q6ZRS4 1044 aa20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 PLEKHH3Q7Z736 793 aa20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 TICAM2Q86XR7 235 aa20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 NKX2-3Q8TAU0 364 aa20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 U2AF1L4Q8WU68 220 aaKnown RBP20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 DEFB118Q96PH6 123 aa20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 VCPKMTQ9H867 229 aa20.29■□□□□ 0.84
PRPF40A-204ENST00000450303 RLFQ13129 1914 aa20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 RAD21O60216 631 aa20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 PRDM1O75626 825 aa20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 SGPL1O95470 568 aa20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 RASA1P20936 1047 aa20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 TRIB2Q92519 343 aa20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 SH2D4AQ9H788 454 aa20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 KANSL2Q9H9L4 492 aa20.28■□□□□ 0.84
PRPF40A-204ENST00000450303 TFRCP02786 760 aaKnown RBP20.27■□□□□ 0.84
PRPF40A-204ENST00000450303 HMGCRP04035 888 aa20.27■□□□□ 0.84
PRPF40A-204ENST00000450303 SDSP20132 328 aa20.27■□□□□ 0.84
PRPF40A-204ENST00000450303 CCNA1P78396 465 aa20.27■□□□□ 0.84
PRPF40A-204ENST00000450303 LBX2Q6XYB7 198 aa20.27■□□□□ 0.84
PRPF40A-204ENST00000450303 HOXC10Q9NYD6 342 aa20.27■□□□□ 0.84
PRPF40A-204ENST00000450303 HIP1O00291 1037 aa20.26■□□□□ 0.83
PRPF40A-204ENST00000450303 CCL14Q16627 93 aa20.26■□□□□ 0.83
PRPF40A-204ENST00000450303 MORN1Q5T089 497 aa20.26■□□□□ 0.83
PRPF40A-204ENST00000450303 SOCS4Q8WXH5 440 aa20.26■□□□□ 0.83
PRPF40A-204ENST00000450303 LPAR1Q92633 364 aa20.26■□□□□ 0.83
PRPF40A-204ENST00000450303 USP6NLQ92738 828 aa20.26■□□□□ 0.83
PRPF40A-204ENST00000450303 NACAP1Q9BZK3 213 aa20.26■□□□□ 0.83
PRPF40A-204ENST00000450303 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.26■□□□□ 0.83
PRPF40A-204ENST00000450303 GREB1LQ9C091 1923 aaPredicted RBP20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 MKI67P46013 3256 aaKnown RBP20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 ROBO3Q96MS0 1386 aa20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 FLOT1O75955 427 aa20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 DSG3P32926 999 aa20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 RGS2P41220 211 aa20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 CASC1Q6TDU7 716 aa20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 ZNF444Q8N0Y2 327 aaPredicted RBP20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 ATG4CQ96DT6 458 aa20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 NAPBQ9H115 298 aa20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 PAK6Q9NQU5 681 aaPredicted RBP20.25■□□□□ 0.83
PRPF40A-204ENST00000450303 WDR46O15213 610 aaKnown RBP20.24■□□□□ 0.83
PRPF40A-204ENST00000450303 PLS1Q14651 629 aa20.24■□□□□ 0.83
PRPF40A-204ENST00000450303 MOV10L1Q9BXT6 1211 aaKnown RBP20.24■□□□□ 0.83
PRPF40A-204ENST00000450303 HMX1Q9NP08 348 aaPredicted RBP20.24■□□□□ 0.83
PRPF40A-204ENST00000450303 FBXO28Q9NVF7 368 aa20.24■□□□□ 0.83
PRPF40A-204ENST00000450303 PARP14Q460N5 1801 aa20.24■□□□□ 0.83
PRPF40A-204ENST00000450303 XRCC5P13010 732 aaKnown RBP20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 ZKSCAN1P17029 563 aaPredicted RBP20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 PTPREP23469 700 aa20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 MAP2K5Q13163 448 aa20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 GOPCQ9HD26 462 aa20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 CLIP2Q9UDT6 1046 aa20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 MYH4Q9Y623 1939 aa20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 RPTORQ8N122 1335 aa20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 COL11A1P12107 1806 aaPredicted RBP20.23■□□□□ 0.83
PRPF40A-204ENST00000450303 SLC15A5A6NIM6 579 aa20.22■□□□□ 0.83
PRPF40A-204ENST00000450303 FOXP2O15409 715 aa20.22■□□□□ 0.83
PRPF40A-204ENST00000450303 CDC45O75419 566 aa20.22■□□□□ 0.83
PRPF40A-204ENST00000450303 FARP2O94887 1054 aaPredicted RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms