RNA–Protein interactions for RNA: ENST00000430071.6

UBE3D-204, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 5

Gene UBE3D, Length 1,352 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-204ENST00000430071 UBXN2AP68543 259 aa20.29■□□□□ 0.84
UBE3D-204ENST00000430071 TMEM179Q6ZVK1 233 aa20.29■□□□□ 0.84
UBE3D-204ENST00000430071 SPDYE16A6NNV3 312 aaPredicted RBP20.28■□□□□ 0.84
UBE3D-204ENST00000430071 GJB1P08034 283 aa20.28■□□□□ 0.84
UBE3D-204ENST00000430071 CYP2B6P20813 491 aa20.28■□□□□ 0.84
UBE3D-204ENST00000430071 PRPF38BQ5VTL8 546 aaKnown RBP20.28■□□□□ 0.84
UBE3D-204ENST00000430071 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.28■□□□□ 0.84
UBE3D-204ENST00000430071 FRMPD3Q5JV73 1810 aa20.28■□□□□ 0.84
UBE3D-204ENST00000430071 MINDY4BA8MYZ0 360 aa20.27■□□□□ 0.84
UBE3D-204ENST00000430071 GJA8P48165 433 aa20.27■□□□□ 0.84
UBE3D-204ENST00000430071 ICA1Q05084 483 aa20.27■□□□□ 0.84
UBE3D-204ENST00000430071 SBK1Q52WX2 424 aa20.27■□□□□ 0.84
UBE3D-204ENST00000430071 SPICE1Q8N0Z3 855 aa20.27■□□□□ 0.84
UBE3D-204ENST00000430071 TRIB2Q92519 343 aa20.27■□□□□ 0.84
UBE3D-204ENST00000430071 RABGAP1Q9Y3P9 1069 aa20.27■□□□□ 0.84
UBE3D-204ENST00000430071 SMCHD1A6NHR9 2005 aa20.27■□□□□ 0.83
UBE3D-204ENST00000430071 RASA1P20936 1047 aa20.26■□□□□ 0.83
UBE3D-204ENST00000430071 CCDC129Q6ZRS4 1044 aa20.26■□□□□ 0.83
UBE3D-204ENST00000430071 GPR142Q7Z601 462 aa20.26■□□□□ 0.83
UBE3D-204ENST00000430071 U2AF1L4Q8WU68 220 aaKnown RBP20.26■□□□□ 0.83
UBE3D-204ENST00000430071 USP6NLQ92738 828 aa20.26■□□□□ 0.83
UBE3D-204ENST00000430071 FSD1Q9BTV5 496 aa20.26■□□□□ 0.83
UBE3D-204ENST00000430071 TMX2Q9Y320 296 aa20.26■□□□□ 0.83
UBE3D-204ENST00000430071 FOXP2O15409 715 aa20.25■□□□□ 0.83
UBE3D-204ENST00000430071 ZFYP08048 801 aaPredicted RBP20.25■□□□□ 0.83
UBE3D-204ENST00000430071 EEF2P13639 858 aaKnown RBP20.25■□□□□ 0.83
UBE3D-204ENST00000430071 CCL14Q16627 93 aa20.25■□□□□ 0.83
UBE3D-204ENST00000430071 ZMYM1Q5SVZ6 1142 aa20.25■□□□□ 0.83
UBE3D-204ENST00000430071 DDRGK1Q96HY6 314 aa20.25■□□□□ 0.83
UBE3D-204ENST00000430071 CCDC17Q96LX7 622 aa20.25■□□□□ 0.83
UBE3D-204ENST00000430071 ARPP21Q9UBL0 812 aaPredicted RBP20.25■□□□□ 0.83
UBE3D-204ENST00000430071 PLXNA1Q9UIW2 1896 aa20.25■□□□□ 0.83
UBE3D-204ENST00000430071 ATP2B2Q01814 1243 aa20.24■□□□□ 0.83
UBE3D-204ENST00000430071 MORN1Q5T089 497 aa20.24■□□□□ 0.83
UBE3D-204ENST00000430071 UBE2Q1Q7Z7E8 422 aa20.24■□□□□ 0.83
UBE3D-204ENST00000430071 AMOTL1Q8IY63 956 aa20.24■□□□□ 0.83
UBE3D-204ENST00000430071 DEFB118Q96PH6 123 aa20.24■□□□□ 0.83
UBE3D-204ENST00000430071 PATL2C9JE40 543 aaKnown RBP20.23■□□□□ 0.83
UBE3D-204ENST00000430071 PRDM1O75626 825 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 SGPL1O95470 568 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 GSPT1P15170 499 aaKnown RBP20.23■□□□□ 0.83
UBE3D-204ENST00000430071 TTC22Q5TAA0 569 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 GIMAP6Q6P9H5 292 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 LBX2Q6XYB7 198 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 PLEKHH3Q7Z736 793 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 IFNL3Q8IZI9 196 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 NUDT12Q9BQG2 462 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 TANGO6Q9C0B7 1094 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 VCPKMTQ9H867 229 aa20.23■□□□□ 0.83
UBE3D-204ENST00000430071 PAK6Q9NQU5 681 aaPredicted RBP20.23■□□□□ 0.83
UBE3D-204ENST00000430071 HMGCRP04035 888 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 APPP05067 770 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 MAPK4P31152 587 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 COG2Q14746 738 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 SAMD1Q6SPF0 538 aaPredicted RBP20.22■□□□□ 0.83
UBE3D-204ENST00000430071 GTF3C2Q8WUA4 911 aaPredicted RBP20.22■□□□□ 0.83
UBE3D-204ENST00000430071 EVI5LQ96CN4 794 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 ARHGEF10LQ9HCE6 1279 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 FBXO28Q9NVF7 368 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 ROBO3Q96MS0 1386 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 TRIOBPQ9H2D6 2365 aa20.22■□□□□ 0.83
UBE3D-204ENST00000430071 TDO2P48775 406 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 WDR78Q5VTH9 848 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 ATG4CQ96DT6 458 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.21■□□□□ 0.83
UBE3D-204ENST00000430071 INCENPQ9NQS7 918 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 TACC3Q9Y6A5 838 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 TRIM6-TRIM34B2RNG4 842 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 DSG3P32926 999 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 VPS53Q5VIR6 699 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 CCAR1Q8IX12 1150 aaKnown RBP20.21■□□□□ 0.83
UBE3D-204ENST00000430071 NKX2-3Q8TAU0 364 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 RILPL2Q969X0 211 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 MOV10L1Q9BXT6 1211 aaKnown RBP20.21■□□□□ 0.83
UBE3D-204ENST00000430071 KANSL2Q9H9L4 492 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 FLRT1Q9NZU1 646 aa20.21■□□□□ 0.83
UBE3D-204ENST00000430071 GNAT2P19087 354 aa20.2■□□□□ 0.82
UBE3D-204ENST00000430071 NPLOC4Q8TAT6 608 aa20.2■□□□□ 0.82
UBE3D-204ENST00000430071 DIS3LQ8TF46 1054 aaKnown RBP20.2■□□□□ 0.82
UBE3D-204ENST00000430071 NUP88Q99567 741 aaPredicted RBP20.2■□□□□ 0.82
UBE3D-204ENST00000430071 CRISPLD2Q9H0B8 497 aa20.2■□□□□ 0.82
UBE3D-204ENST00000430071 MKNK2Q9HBH9 465 aa20.2■□□□□ 0.82
UBE3D-204ENST00000430071 MCM3APO60318 1980 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 IGKV6D-41A0A0C4DH26 115 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 FLOT1O75955 427 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 FARP2O94887 1054 aaPredicted RBP20.19■□□□□ 0.82
UBE3D-204ENST00000430071 TFRCP02786 760 aaKnown RBP20.19■□□□□ 0.82
UBE3D-204ENST00000430071 PTPREP23469 700 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 CACNB2Q08289 660 aaPredicted RBP20.19■□□□□ 0.82
UBE3D-204ENST00000430071 MAP2K5Q13163 448 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 MAP3K21Q5TCX8 1036 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 SOCS4Q8WXH5 440 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 FAM227BQ96M60 508 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 HOXC10Q9NYD6 342 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 ZNF236Q9UL36 1845 aa20.19■□□□□ 0.82
UBE3D-204ENST00000430071 RAD21O60216 631 aa20.18■□□□□ 0.82
UBE3D-204ENST00000430071 XRCC5P13010 732 aaKnown RBP20.18■□□□□ 0.82
UBE3D-204ENST00000430071 PRKAR2AP13861 404 aaKnown RBP20.18■□□□□ 0.82
UBE3D-204ENST00000430071 SDSP20132 328 aa20.18■□□□□ 0.82
UBE3D-204ENST00000430071 CCND3P30281 292 aaPredicted RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms