RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 ARHGEF10LQ9HCE6 1279 aa11.32□□□□□ -0.6
TRIM39-208ENST00000428555 HOXC10Q9NYD6 342 aa11.32□□□□□ -0.6
TRIM39-208ENST00000428555 BTBD7Q9P203 1132 aa11.32□□□□□ -0.6
TRIM39-208ENST00000428555 MYH1P12882 1939 aa11.32□□□□□ -0.6
TRIM39-208ENST00000428555 ZSWIM8A7E2V4 1837 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 SPDYE16A6NNV3 312 aaPredicted RBP11.31□□□□□ -0.6
TRIM39-208ENST00000428555 TRIM6-TRIM34B2RNG4 842 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 PRDM1O75626 825 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 CYP2B6P20813 491 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 MAPK4P31152 587 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 PLEKHM2Q8IWE5 1019 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 ZNF444Q8N0Y2 327 aaPredicted RBP11.31□□□□□ -0.6
TRIM39-208ENST00000428555 RILPL2Q969X0 211 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 TANGO6Q9C0B7 1094 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 UNC93B1Q9H1C4 597 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 VCPKMTQ9H867 229 aa11.31□□□□□ -0.6
TRIM39-208ENST00000428555 FOCADQ5VW36 1801 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 FOXP2O15409 715 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 RAD21O60216 631 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 INHAP05111 366 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 GJB1P08034 283 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 VPS53Q5VIR6 699 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 SAMD1Q6SPF0 538 aaPredicted RBP11.3□□□□□ -0.6
TRIM39-208ENST00000428555 LBX2Q6XYB7 198 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 GPR142Q7Z601 462 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 PLEKHH3Q7Z736 793 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 LPAR1Q92633 364 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 FAM227BQ96M60 508 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 NAPBQ9H115 298 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 SH2D4AQ9H788 454 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 INCENPQ9NQS7 918 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 HELLSQ9NRZ9 838 aa11.3□□□□□ -0.6
TRIM39-208ENST00000428555 DSG3P32926 999 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 CCNA1P78396 465 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 PPARAQ07869 468 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 TRIM32Q13049 653 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 MCMDC2Q4G0Z9 681 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 MORN1Q5T089 497 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 WDR78Q5VTH9 848 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 USP6NLQ92738 828 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 NUDT12Q9BQG2 462 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 OSBPL3Q9H4L5 887 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 ZNF287Q9HBT7 754 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 CWC22Q9HCG8 908 aaKnown RBP11.29□□□□□ -0.6
TRIM39-208ENST00000428555 NYAP2Q9P242 653 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 CLIP2Q9UDT6 1046 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 PTPRFP10586 1907 aa11.29□□□□□ -0.6
TRIM39-208ENST00000428555 PDE4DIPQ5VU43 2346 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 A0A0D9SFI3 127 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 WDR46O15213 610 aaKnown RBP11.28□□□□□ -0.6
TRIM39-208ENST00000428555 FLOT1O75955 427 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 SLC3A2P08195 630 aaKnown RBP11.28□□□□□ -0.6
TRIM39-208ENST00000428555 GJA8P48165 433 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 TFAP4Q01664 338 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 CTDSPL2Q05D32 466 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 PDE4BQ07343 736 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 NMIQ13287 307 aaPredicted RBP11.28□□□□□ -0.6
TRIM39-208ENST00000428555 FAM47AQ5JRC9 791 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 SHISA4Q96DD7 197 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 ATG4CQ96DT6 458 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 DEFB118Q96PH6 123 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 MOV10L1Q9BXT6 1211 aaKnown RBP11.28□□□□□ -0.6
TRIM39-208ENST00000428555 FBXO28Q9NVF7 368 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 TACC3Q9Y6A5 838 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 ATAD5Q96QE3 1844 aa11.28□□□□□ -0.6
TRIM39-208ENST00000428555 IGKV6D-41A0A0C4DH26 115 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 F5H6K3 240 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 SGPL1O95470 568 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 FGAP02671 866 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 TFRCP02786 760 aaKnown RBP11.27□□□□□ -0.61
TRIM39-208ENST00000428555 HMGCRP04035 888 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 XRCC5P13010 732 aaKnown RBP11.27□□□□□ -0.61
TRIM39-208ENST00000428555 SDSP20132 328 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 PTPREP23469 700 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 KLRC3Q07444 240 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 PLS1Q14651 629 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 ALX1Q15699 326 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 CCL14Q16627 93 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 FAM83BQ5T0W9 1011 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 TICAM2Q86XR7 235 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 NEDD1Q8NHV4 660 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 NKX2-3Q8TAU0 364 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 U2AF1L4Q8WU68 220 aaKnown RBP11.27□□□□□ -0.61
TRIM39-208ENST00000428555 SOCS4Q8WXH5 440 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 TRIB2Q92519 343 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 MKL1Q969V6 931 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 CEP95Q96GE4 821 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 NUP88Q99567 741 aaPredicted RBP11.27□□□□□ -0.61
TRIM39-208ENST00000428555 SPATC1LQ9H0A9 340 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 GOPCQ9HD26 462 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 MTMR4Q9NYA4 1195 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 ROBO3Q96MS0 1386 aa11.27□□□□□ -0.61
TRIM39-208ENST00000428555 DDX60LQ5H9U9 1706 aaKnown RBP11.26□□□□□ -0.61
TRIM39-208ENST00000428555 LOC285556D6RIA3 1793 aa11.26□□□□□ -0.61
TRIM39-208ENST00000428555 SLC15A5A6NIM6 579 aa11.26□□□□□ -0.61
TRIM39-208ENST00000428555 TSPY3P0CV98 308 aa11.26□□□□□ -0.61
TRIM39-208ENST00000428555 TSPY8P0CW00 308 aa11.26□□□□□ -0.61
TRIM39-208ENST00000428555 HSPD1P10809 573 aaKnown RBP11.26□□□□□ -0.61
TRIM39-208ENST00000428555 PDE4AP27815 886 aa11.26□□□□□ -0.61
TRIM39-208ENST00000428555 RGS2P41220 211 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms