RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 SMCHD1A6NHR9 2005 aa15.67■□□□□ 0.1
LINC00339-203ENST00000420503 PARP14Q460N5 1801 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 CYP2D7A0A087X1C5 515 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 MAGEB6P1A0A0J9YX57 407 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 MPHOSPH10O00566 681 aaKnown RBP15.66■□□□□ 0.1
LINC00339-203ENST00000420503 PRKAB2O43741 272 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 POLR3DP05423 398 aaPredicted RBP15.66■□□□□ 0.1
LINC00339-203ENST00000420503 HOXC6P09630 235 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 ADORA2AP29274 412 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 CCNA1P78396 465 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 SAMD1Q6SPF0 538 aaPredicted RBP15.66■□□□□ 0.1
LINC00339-203ENST00000420503 LBX2Q6XYB7 198 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 TTC6Q86TZ1 520 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 SIAH1Q8IUQ4 282 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 FTSJ3Q8IY81 847 aaKnown RBP15.66■□□□□ 0.1
LINC00339-203ENST00000420503 SPICE1Q8N0Z3 855 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 ZNF532Q9HCE3 1301 aa15.66■□□□□ 0.1
LINC00339-203ENST00000420503 TCRBV5S4A2TA0A5A2 114 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 MYCNP04198 464 aaPredicted RBP15.65■□□□□ 0.1
LINC00339-203ENST00000420503 AKR1B1P15121 316 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 ERCC3P19447 782 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 USP14P54578 494 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 MAP3K12Q12852 859 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 C9orf50Q5SZB4 431 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 LPAR1Q92633 364 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 TANGO6Q9C0B7 1094 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 CABP5Q9NP86 173 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 MCM9Q9NXL9 1143 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 ATP11BQ9Y2G3 1177 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 IVNS1ABPQ9Y6Y0 642 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 COL11A1P12107 1806 aaPredicted RBP15.65■□□□□ 0.1
LINC00339-203ENST00000420503 ZNF236Q9UL36 1845 aa15.65■□□□□ 0.1
LINC00339-203ENST00000420503 MYH8P13535 1937 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 POTEB2H3BUK9 544 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 GOLIM4O00461 696 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 SLC9C2Q5TAH2 1124 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 SH3RF1Q7Z6J0 888 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 ATG4CQ96DT6 458 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 DNAJC2Q99543 621 aaKnown RBP15.64■□□□□ 0.09
LINC00339-203ENST00000420503 SPATC1LQ9H0A9 340 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 ARMT1Q9H993 441 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 DCP1AQ9NPI6 582 aaPredicted RBP15.64■□□□□ 0.09
LINC00339-203ENST00000420503 ZNFX1Q9P2E3 1918 aaKnown RBP15.64■□□□□ 0.09
LINC00339-203ENST00000420503 CDH23Q9H251 3354 aa15.64■□□□□ 0.09
LINC00339-203ENST00000420503 DNM1LO00429 736 aa15.63■□□□□ 0.09
LINC00339-203ENST00000420503 GLRX3O76003 335 aaKnown RBP15.63■□□□□ 0.09
LINC00339-203ENST00000420503 SHHQ15465 462 aa15.63■□□□□ 0.09
LINC00339-203ENST00000420503 TRIM60Q495X7 471 aa15.63■□□□□ 0.09
LINC00339-203ENST00000420503 RHPN1Q8TCX5 695 aa15.63■□□□□ 0.09
LINC00339-203ENST00000420503 FERMT2Q96AC1 680 aa15.63■□□□□ 0.09
LINC00339-203ENST00000420503 LENG1Q96BZ8 264 aaPredicted RBP15.63■□□□□ 0.09
LINC00339-203ENST00000420503 COL25A1Q9BXS0 654 aaPredicted RBP15.63■□□□□ 0.09
LINC00339-203ENST00000420503 VCANP13611 3396 aa15.63■□□□□ 0.09
LINC00339-203ENST00000420503 PLS1Q14651 629 aa15.62■□□□□ 0.09
LINC00339-203ENST00000420503 COG2Q14746 738 aa15.62■□□□□ 0.09
LINC00339-203ENST00000420503 FAM47AQ5JRC9 791 aa15.62■□□□□ 0.09
LINC00339-203ENST00000420503 DPP9Q86TI2 863 aa15.62■□□□□ 0.09
LINC00339-203ENST00000420503 PRDM5Q9NQX1 630 aaPredicted RBP15.62■□□□□ 0.09
LINC00339-203ENST00000420503 FBXO28Q9NVF7 368 aa15.62■□□□□ 0.09
LINC00339-203ENST00000420503 PRUNE2Q8WUY3 3088 aa15.62■□□□□ 0.09
LINC00339-203ENST00000420503 TRIM43BA6NCK2 446 aa15.61■□□□□ 0.09
LINC00339-203ENST00000420503 MBD4O95243 580 aa15.61■□□□□ 0.09
LINC00339-203ENST00000420503 ITGB8P26012 769 aa15.61■□□□□ 0.09
LINC00339-203ENST00000420503 HNRNPUQ00839 825 aaKnown RBP eCLIP15.61■□□□□ 0.09
LINC00339-203ENST00000420503 SLC39A5Q6ZMH5 540 aa15.61■□□□□ 0.09
LINC00339-203ENST00000420503 NCAPG2Q86XI2 1143 aa15.61■□□□□ 0.09
LINC00339-203ENST00000420503 SIRT2Q8IXJ6 389 aa15.61■□□□□ 0.09
LINC00339-203ENST00000420503 BADQ92934 168 aa15.61■□□□□ 0.09
LINC00339-203ENST00000420503 TRIM43Q96BQ3 446 aaPredicted RBP15.61■□□□□ 0.09
LINC00339-203ENST00000420503 LBHD1Q9BQE6 289 aaPredicted RBP15.61■□□□□ 0.09
LINC00339-203ENST00000420503 CRNKL1Q9BZJ0 848 aaKnown RBP15.61■□□□□ 0.09
LINC00339-203ENST00000420503 IGSF3O75054 1194 aa15.6■□□□□ 0.09
LINC00339-203ENST00000420503 FLOT1O75955 427 aa15.6■□□□□ 0.09
LINC00339-203ENST00000420503 PGK2P07205 417 aa15.6■□□□□ 0.09
LINC00339-203ENST00000420503 TAL1P17542 331 aaPredicted RBP15.6■□□□□ 0.09
LINC00339-203ENST00000420503 DSG3P32926 999 aa15.6■□□□□ 0.09
LINC00339-203ENST00000420503 ADCYAP1R1P41586 468 aa15.6■□□□□ 0.09
LINC00339-203ENST00000420503 TMEM132BQ14DG7 1078 aa15.6■□□□□ 0.09
LINC00339-203ENST00000420503 OLFML2BQ68BL8 750 aa15.6■□□□□ 0.09
LINC00339-203ENST00000420503 PDLIM7Q9NR12 457 aa15.6■□□□□ 0.09
LINC00339-203ENST00000420503 MSCO60682 206 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 EPHB4P54760 987 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 ICA1Q05084 483 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 LRRC41Q15345 812 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 TMEM179Q6ZVK1 233 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 CERS3Q8IU89 383 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.59■□□□□ 0.09
LINC00339-203ENST00000420503 MAML3Q96JK9 1138 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 BOLA2Q9H3K6 86 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 PLXNA1Q9UIW2 1896 aa15.59■□□□□ 0.09
LINC00339-203ENST00000420503 SEPT4O43236 478 aa15.58■□□□□ 0.08
LINC00339-203ENST00000420503 SNX17Q15036 470 aa15.58■□□□□ 0.08
LINC00339-203ENST00000420503 ERC1Q8IUD2 1116 aa15.58■□□□□ 0.08
LINC00339-203ENST00000420503 SHCBP1Q8NEM2 672 aa15.58■□□□□ 0.08
LINC00339-203ENST00000420503 CDX2Q99626 313 aaPredicted RBP15.58■□□□□ 0.08
LINC00339-203ENST00000420503 TTYH1Q9H313 450 aaPredicted RBP15.58■□□□□ 0.08
LINC00339-203ENST00000420503 VCPKMTQ9H867 229 aa15.58■□□□□ 0.08
LINC00339-203ENST00000420503 HOXC10Q9NYD6 342 aa15.58■□□□□ 0.08
LINC00339-203ENST00000420503 KBTBD13C9JR72 458 aa15.57■□□□□ 0.08
LINC00339-203ENST00000420503 PGK1P00558 417 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms