RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 JAG1P78504 1218 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 ICA1Q05084 483 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 PPARAQ07869 468 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 TREML2Q5T2D2 321 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 B4GALNT3Q6L9W6 998 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 CENPQQ7L2Z9 268 aaPredicted RBP7.59□□□□□ -1.19
USP54-202ENST00000413442 ABRAQ8N0Z2 381 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 ANKRD13CQ8N6S4 541 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 PRPF38AQ8NAV1 312 aaKnown RBP7.59□□□□□ -1.19
USP54-202ENST00000413442 GMCL1P1Q8NEA9 526 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 RILPL2Q969X0 211 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 NUDT12Q9BQG2 462 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 DSCC1Q9BVC3 393 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 MROH8Q9H579 483 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 DIAPH3Q9NSV4 1193 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 RBPJLQ9UBG7 517 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 ADAMTS5Q9UNA0 930 aa7.59□□□□□ -1.19
USP54-202ENST00000413442 CCDC171Q6TFL3 1326 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 RAD50Q92878 1312 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 IGKV6D-41A0A0C4DH26 115 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 ZNF213O14771 459 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 FGAP02671 866 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 HSPD1P10809 573 aaKnown RBP7.58□□□□□ -1.2
USP54-202ENST00000413442 EEF2P13639 858 aaKnown RBP7.58□□□□□ -1.2
USP54-202ENST00000413442 VCAM1P19320 739 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 RASA1P20936 1047 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 DSG3P32926 999 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 NOVP48745 357 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 OAZ1P54368 228 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 ERVK-9P63128 1117 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 ERVK-24P63145 666 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 SIAH1Q8IUQ4 282 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 OTUD7AQ8TE49 926 aaPredicted RBP7.58□□□□□ -1.2
USP54-202ENST00000413442 CHURC1Q8WUH1 139 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 DYNLL2Q96FJ2 89 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 ZNF333Q96JL9 665 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 MTMR4Q9NYA4 1195 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 IVNS1ABPQ9Y6Y0 642 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 PLIN4Q96Q06 1357 aa7.58□□□□□ -1.2
USP54-202ENST00000413442 GREB1LQ9C091 1923 aaPredicted RBP7.57□□□□□ -1.2
USP54-202ENST00000413442 A0A1W2PRG0 241 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 SLC15A5A6NIM6 579 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 TSPY2A6NKD2 308 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 F5H6K3 240 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 M0R2C6 588 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 ATP2A1O14983 1001 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 ADCY3O60266 1144 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 GJB1P08034 283 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 HOXC6P09630 235 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 SLURP2P0DP57 97 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 AKR1B1P15121 316 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 RGS2P41220 211 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 FLT3LGP49771 235 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 KLRC3Q07444 240 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 TTC22Q5TAA0 569 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 MFSD6Q6ZSS7 791 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 PLEKHH3Q7Z736 793 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 FAM160B2Q86V87 743 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 DGKHQ86XP1 1220 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 ACER1Q8TDN7 264 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 GMCL1Q96IK5 515 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 RPAP3Q9H6T3 665 aaPredicted RBP7.57□□□□□ -1.2
USP54-202ENST00000413442 CNNM2Q9H8M5 875 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 CLIP2Q9UDT6 1046 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 FEM1BQ9UK73 627 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 GJD2Q9UKL4 321 aa7.57□□□□□ -1.2
USP54-202ENST00000413442 DIS3Q9Y2L1 958 aaKnown RBP7.57□□□□□ -1.2
USP54-202ENST00000413442 MYH4Q9Y623 1939 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 MSCO60682 206 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 EIF5BO60841 1220 aaKnown RBP7.56□□□□□ -1.2
USP54-202ENST00000413442 CYP2D6P10635 497 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 PTPREP23469 700 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 TFAP4Q01664 338 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 TRAF1Q13077 416 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 IMMTQ16891 758 aaKnown RBP7.56□□□□□ -1.2
USP54-202ENST00000413442 SLFNL1Q499Z3 407 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 AKNAD1Q5T1N1 836 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 TSHZ3Q63HK5 1081 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.56□□□□□ -1.2
USP54-202ENST00000413442 CCDC84Q86UT8 332 aaPredicted RBP7.56□□□□□ -1.2
USP54-202ENST00000413442 IQCA1Q86XH1 822 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 MSL3Q8N5Y2 521 aaKnown RBP7.56□□□□□ -1.2
USP54-202ENST00000413442 ANKLE1Q8NAG6 615 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 ESR2Q92731 530 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 SEC62Q99442 399 aaKnown RBP7.56□□□□□ -1.2
USP54-202ENST00000413442 MTA3Q9BTC8 594 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 KRT23Q9C075 422 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 TANGO6Q9C0B7 1094 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 CWC22Q9HCG8 908 aaKnown RBP7.56□□□□□ -1.2
USP54-202ENST00000413442 EPB41L4AQ9HCS5 686 aaPredicted RBP7.56□□□□□ -1.2
USP54-202ENST00000413442 BIN2Q9UBW5 565 aaPredicted RBP7.56□□□□□ -1.2
USP54-202ENST00000413442 FBXO40Q9UH90 709 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 NRBP1Q9UHY1 535 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.56□□□□□ -1.2
USP54-202ENST00000413442 PTCH2Q9Y6C5 1203 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 DOCK3Q8IZD9 2030 aa7.56□□□□□ -1.2
USP54-202ENST00000413442 RPTORQ8N122 1335 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 ZNFX1Q9P2E3 1918 aaKnown RBP7.55□□□□□ -1.2
USP54-202ENST00000413442 CYP2D7A0A087X1C5 515 aa7.55□□□□□ -1.2
USP54-202ENST00000413442 SPDYE16A6NNV3 312 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms