RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 MAP3K7O43318 606 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 NEK2P51955 445 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 LONRF2Q1L5Z9 754 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 GIPC2Q8TF65 315 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 RNF113AO15541 343 aaKnown RBP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 ABCD1P33897 745 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 ARHGDIAP52565 204 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 BBS5Q8N3I7 341 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 FBXL13Q8NEE6 735 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 JDP2Q8WYK2 163 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 MRPL44Q9H9J2 332 aaKnown RBP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 NFKBIAP25963 317 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 IQCB1Q15051 598 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 TRIM45Q9H8W5 580 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 TMED1Q13445 227 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 SEPT2Q15019 361 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 IFT122Q9HBG6 1241 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 MRPL40Q9NQ50 206 aaKnown RBP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 SAR1BQ9Y6B6 198 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 KHDRBS2Q5VWX1 349 aaKnown RBP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 BANK1Q8NDB2 785 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 MYRIPQ8NFW9 859 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 MGARPQ8TDB4 240 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 SKA2Q8WVK7 121 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 HELLSQ9NRZ9 838 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 CUTAO60888 179 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 LDHBP07195 334 aaKnown RBP8.64□□□□□ -1.03
SYNE1-210ENST00000409694 PYGBP11216 843 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 DIABLOQ9NR28 239 aa8.64□□□□□ -1.03
SYNE1-210ENST00000409694 ATICP31939 592 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 CASP2P42575 452 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 ATG16L1Q676U5 607 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 MIS18AQ9NYP9 233 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 ATP5J2-PTCD1G3V325 749 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 ADCY8P40145 1251 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 MAP3K10Q02779 954 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 RAB3GAP1Q15042 981 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 GRAMD4Q6IC98 578 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 DHX32Q7L7V1 743 aaKnown RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 TTC6Q86TZ1 520 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 ST13P4Q8IZP2 240 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 MCM9Q9NXL9 1143 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 SUCLA2Q9P2R7 463 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 DNM3Q9UQ16 869 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 RASGRF2O14827 1237 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 NVLO15381 856 aaKnown RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 SKIP12755 728 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 KLHL30Q0D2K2 578 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 C16orf87Q6PH81 154 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 NLRP3Q96P20 1036 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 BIN2Q9UBW5 565 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 ZNF212Q9UDV6 495 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 SOS1Q07889 1333 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 ATF2P15336 505 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 LONP1P36776 959 aaKnown RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 TRIM11Q96F44 468 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 LARP6Q9BRS8 491 aaKnown RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 NBPF3Q9H094 633 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 CNOT10Q9H9A5 744 aaKnown RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 STX17P56962 302 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 ZSCAN26Q16670 478 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 EFCAB13Q8IY85 973 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 FAM81BQ96LP2 452 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 TRIM31Q9BZY9 425 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 SLC9C2Q5TAH2 1124 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 USTQ9Y2C2 406 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 ALDH1L1O75891 902 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 GCNT3O95395 438 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 PPARGP37231 505 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 PDE6CP51160 858 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 OCA2Q04671 838 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 GFM2Q969S9 779 aaKnown RBP8.63□□□□□ -1.03
SYNE1-210ENST00000409694 CHMP6Q96FZ7 201 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 TMEM87BQ96K49 555 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 IVNS1ABPQ9Y6Y0 642 aa8.63□□□□□ -1.03
SYNE1-210ENST00000409694 SERPINB2P05120 415 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 NPR1P16066 1061 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 EEF1B2P24534 225 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 FLOT2Q14254 428 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 CALCRLQ16602 461 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 KRT80Q6KB66 452 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 PATL1Q86TB9 770 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 UPF3AQ9H1J1 476 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 CAPN9O14815 690 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 KRT4P19013 534 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 GPTP24298 496 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 SLMAPQ14BN4 828 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 CCDC92Q53HC0 331 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 TACO1Q9BSH4 297 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 VEZTQ9HBM0 779 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 SCAF11Q99590 1463 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 HARSP12081 509 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 KLC3Q6P597 504 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 NME8Q8N427 588 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 MAGEB6Q8N7X4 407 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 RHPN1Q8TCX5 695 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 CLEC11AQ9Y240 323 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 PTPDC1A2A3K4 754 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 MCF2P10911 925 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms