RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 KLHL40Q2TBA0 621 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 RBM26Q5T8P6 1007 aaKnown RBP16.3■□□□□ 0.2
GPNMB-203ENST00000409458 CDAN1Q8IWY9 1227 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 SHISA4Q96DD7 197 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 TMEM39BQ9GZU3 492 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 UTRNP46939 3433 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 GDF11O95390 407 aa16.29■□□□□ 0.2
GPNMB-203ENST00000409458 TTLL1O95922 423 aa16.29■□□□□ 0.2
GPNMB-203ENST00000409458 AKAP17AQ02040 695 aaKnown RBP16.29■□□□□ 0.2
GPNMB-203ENST00000409458 SAMD7Q7Z3H4 446 aa16.29■□□□□ 0.2
GPNMB-203ENST00000409458 FAM83AQ86UY5 434 aa16.29■□□□□ 0.2
GPNMB-203ENST00000409458 CNOT7Q9UIV1 285 aaKnown RBP16.29■□□□□ 0.2
GPNMB-203ENST00000409458 V9GY48 417 aaPredicted RBP16.29■□□□□ 0.2
GPNMB-203ENST00000409458 PALM3A6NDB9 673 aaPredicted RBP16.28■□□□□ 0.2
GPNMB-203ENST00000409458 GOLGA8HP0CJ92 632 aa16.28■□□□□ 0.2
GPNMB-203ENST00000409458 RRP1BQ14684 758 aaKnown RBP16.28■□□□□ 0.2
GPNMB-203ENST00000409458 SLC35G1Q2M3R5 365 aa16.28■□□□□ 0.2
GPNMB-203ENST00000409458 TFIP11Q9UBB9 837 aaKnown RBP16.28■□□□□ 0.2
GPNMB-203ENST00000409458 CLIP2Q9UDT6 1046 aa16.28■□□□□ 0.2
GPNMB-203ENST00000409458 HERC5Q9UII4 1024 aaKnown RBP16.28■□□□□ 0.2
GPNMB-203ENST00000409458 KCNJ14Q9UNX9 436 aa16.28■□□□□ 0.2
GPNMB-203ENST00000409458 ASTN2O75129 1339 aaPredicted RBP16.28■□□□□ 0.2
GPNMB-203ENST00000409458 MMP1P03956 469 aa16.27■□□□□ 0.2
GPNMB-203ENST00000409458 GNAQP50148 359 aa16.27■□□□□ 0.2
GPNMB-203ENST00000409458 CSPP1Q1MSJ5 1256 aa16.27■□□□□ 0.2
GPNMB-203ENST00000409458 KIF4BQ2VIQ3 1234 aa16.27■□□□□ 0.2
GPNMB-203ENST00000409458 TBC1D10BQ4KMP7 808 aaPredicted RBP16.27■□□□□ 0.2
GPNMB-203ENST00000409458 USP17L2Q6R6M4 530 aa16.27■□□□□ 0.2
GPNMB-203ENST00000409458 FTOQ9C0B1 505 aaKnown RBP eCLIP16.27■□□□□ 0.2
GPNMB-203ENST00000409458 GZF1Q9H116 711 aaPredicted RBP16.27■□□□□ 0.2
GPNMB-203ENST00000409458 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.27■□□□□ 0.2
GPNMB-203ENST00000409458 PGAP2Q9UHJ9 254 aa16.27■□□□□ 0.2
GPNMB-203ENST00000409458 SCAF8Q9UPN6 1271 aaKnown RBP16.27■□□□□ 0.2
GPNMB-203ENST00000409458 USP17L5A8MUK1 530 aa16.27■□□□□ 0.19
GPNMB-203ENST00000409458 PARP1P09874 1014 aaKnown RBP16.27■□□□□ 0.19
GPNMB-203ENST00000409458 PDHBP11177 359 aa16.27■□□□□ 0.19
GPNMB-203ENST00000409458 JAG1P78504 1218 aa16.27■□□□□ 0.19
GPNMB-203ENST00000409458 ABCB5Q2M3G0 1257 aa16.27■□□□□ 0.19
GPNMB-203ENST00000409458 BRAPQ7Z569 592 aa16.27■□□□□ 0.19
GPNMB-203ENST00000409458 LEO1Q8WVC0 666 aaPredicted RBP16.27■□□□□ 0.19
GPNMB-203ENST00000409458 USP28Q96RU2 1077 aa16.27■□□□□ 0.19
GPNMB-203ENST00000409458 VPS54Q9P1Q0 977 aa16.27■□□□□ 0.19
GPNMB-203ENST00000409458 BAZ2BQ9UIF8 2168 aaKnown RBP16.26■□□□□ 0.19
GPNMB-203ENST00000409458 ELP1O95163 1332 aa16.26■□□□□ 0.19
GPNMB-203ENST00000409458 CYTH3O43739 400 aa16.26■□□□□ 0.19
GPNMB-203ENST00000409458 MBD3O95983 291 aa16.26■□□□□ 0.19
GPNMB-203ENST00000409458 ATP2B2Q01814 1243 aa16.26■□□□□ 0.19
GPNMB-203ENST00000409458 SEPT2Q15019 361 aa16.26■□□□□ 0.19
GPNMB-203ENST00000409458 TMEM179Q6ZVK1 233 aa16.26■□□□□ 0.19
GPNMB-203ENST00000409458 PIBF1Q8WXW3 757 aa16.26■□□□□ 0.19
GPNMB-203ENST00000409458 SCAND2PQ9GZW5 306 aaPredicted RBP16.26■□□□□ 0.19
GPNMB-203ENST00000409458 FRMPD2Q68DX3 1309 aaPredicted RBP16.25■□□□□ 0.19
GPNMB-203ENST00000409458 KLRF2D3W0D1 207 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 SNHG28P0DPA3 235 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 SCG2P13521 617 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 TNNI2P48788 182 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 UBE2HP62256 183 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 CEBPZQ03701 1054 aaKnown RBP16.25■□□□□ 0.19
GPNMB-203ENST00000409458 PFKFB3Q16875 520 aaPredicted RBP16.25■□□□□ 0.19
GPNMB-203ENST00000409458 PPP4R3BQ5MIZ7 849 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 MYSM1Q5VVJ2 828 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 GPC2Q8N158 579 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 SPATA32Q96LK8 384 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 ZNF396Q96N95 335 aaPredicted RBP16.25■□□□□ 0.19
GPNMB-203ENST00000409458 CPVLQ9H3G5 476 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 CFAP45Q9UL16 551 aa16.25■□□□□ 0.19
GPNMB-203ENST00000409458 GH2P01242 217 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 EEF2P13639 858 aaKnown RBP16.24■□□□□ 0.19
GPNMB-203ENST00000409458 VEGFAP15692 232 aaPredicted RBP16.24■□□□□ 0.19
GPNMB-203ENST00000409458 U2AF2P26368 475 aaKnown RBP eCLIP16.24■□□□□ 0.19
GPNMB-203ENST00000409458 ICA1Q05084 483 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 GNL2Q13823 731 aaKnown RBP16.24■□□□□ 0.19
GPNMB-203ENST00000409458 RASA3Q14644 834 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 TPRNQ4KMQ1 711 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 DIS3L2Q8IYB7 885 aaKnown RBP16.24■□□□□ 0.19
GPNMB-203ENST00000409458 LZTS2Q9BRK4 669 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 PHF20Q9BVI0 1012 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 SPZ1Q9BXG8 430 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 KANSL2Q9H9L4 492 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 GPRC5DQ9NZD1 345 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 RNF181Q9P0P0 153 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 NYAP2Q9P242 653 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 RBM27Q9P2N5 1060 aaKnown RBP16.24■□□□□ 0.19
GPNMB-203ENST00000409458 HACL1Q9UJ83 578 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 BTBD18B2RXH4 712 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 TBC1D12O60347 775 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 XBP1P17861 261 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 TNFAIP1Q13829 316 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 SAFBQ15424 915 aaKnown RBP eCLIP16.24■□□□□ 0.19
GPNMB-203ENST00000409458 ATL3Q6DD88 541 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 CAVIN1Q6NZI2 390 aaKnown RBP16.24■□□□□ 0.19
GPNMB-203ENST00000409458 SIAH1Q8IUQ4 282 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 TRPM4Q8TD43 1214 aa16.24■□□□□ 0.19
GPNMB-203ENST00000409458 ATAD5Q96QE3 1844 aa16.23■□□□□ 0.19
GPNMB-203ENST00000409458 H7C1D1 291 aa16.23■□□□□ 0.19
GPNMB-203ENST00000409458 ASPRV1Q53RT3 343 aa16.23■□□□□ 0.19
GPNMB-203ENST00000409458 MIGA2Q7L4E1 593 aa16.23■□□□□ 0.19
GPNMB-203ENST00000409458 OXER1Q8TDS5 423 aa16.23■□□□□ 0.19
GPNMB-203ENST00000409458 TEPSINQ96N21 525 aa16.23■□□□□ 0.19
GPNMB-203ENST00000409458 NR5A1Q13285 461 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms