RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 CUL4AQ13619 759 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 NAP1L5Q96NT1 182 aaPredicted RBP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 CAMKK2Q96RR4 588 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 PAGR1Q9BTK6 254 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 TRPM3Q9HCF6 1732 aaPredicted RBP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 STAT2P52630 851 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 PPP4CP60510 307 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 SYCP1Q15431 976 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 KRT26Q7Z3Y9 468 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 FERMT2Q96AC1 680 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 SLC10A4Q96EP9 437 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 FLT1P17948 1338 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 NEDD4P46934 1319 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 BACH1O14867 736 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 CUTAO60888 179 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 GMPSP49915 693 aaPredicted RBP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 CCDC173Q0VFZ6 552 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 MYSM1Q5VVJ2 828 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 CDC42EP5Q6NZY7 148 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 MB21D2Q8IYB1 491 aaPredicted RBP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 NSUN7Q8NE18 718 aaKnown RBP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 CCPG1Q9ULG6 757 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 DKC1O60832 514 aaKnown RBP eCLIP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 YEATS4O95619 227 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 MYCLP12524 364 aaPredicted RBP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 OSBPP22059 807 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 ASIC1P78348 528 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 TXNRD3Q86VQ6 643 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 C2orf69Q8N8R5 385 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 NEDD1Q8NHV4 660 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 WRNIP1Q96S55 665 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 CCNA1P78396 465 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 BRDTQ58F21 947 aaPredicted RBP9.37□□□□□ -0.91
PTPRD-204ENST00000397606 KCTD1Q719H9 257 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 USP17L2Q6R6M4 530 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 SLC44A5Q8NCS7 719 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 DCAF4Q8WV16 495 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 GPKOWQ92917 476 aaPredicted RBP eCLIP9.37□□□□□ -0.913e-12■■■■■ 70.5
PTPRD-204ENST00000397606 BIN2Q9UBW5 565 aaPredicted RBP9.37□□□□□ -0.91
PTPRD-204ENST00000397606 ZNF70Q9UC06 446 aaPredicted RBP9.37□□□□□ -0.91
PTPRD-204ENST00000397606 HACL1Q9UJ83 578 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 ELP1O95163 1332 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 USP17L5A8MUK1 530 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 TXKP42681 527 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 ZNF165P49910 485 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 RASA3Q14644 834 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 FKBP15Q5T1M5 1219 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 FAM173BQ6P4H8 233 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 FAM151AQ8WW52 585 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 MXD3Q9BW11 206 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 MYOZ2Q9NPC6 264 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 PRPF3O43395 683 aaKnown RBP9.37□□□□□ -0.91
PTPRD-204ENST00000397606 FAM160A1Q05DH4 1040 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 CALCRLQ16602 461 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 CRY2Q49AN0 593 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 SYCP3Q8IZU3 236 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 TMEM47Q9BQJ4 181 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 MTMR6Q9Y217 621 aa9.37□□□□□ -0.91
PTPRD-204ENST00000397606 GNPTABQ3T906 1256 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 SYDE2Q5VT97 1194 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 NLRX1Q86UT6 975 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 ANKRD35Q8N283 1001 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 PSMD1Q99460 953 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 SALL1Q9NSC2 1324 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 SEPT2Q15019 361 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 FAM114A1Q8IWE2 563 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 ENAHQ8N8S7 591 aaPredicted RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 LEO1Q8WVC0 666 aaPredicted RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 LUC7LQ9NQ29 371 aaKnown RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 NHSL1Q5SYE7 1610 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 FAM205AQ6ZU69 1335 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 BTBD18B2RXH4 712 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 NEMFO60524 1076 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 ECM2O94769 699 aaPredicted RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 CCT6AP40227 531 aaKnown RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 NEK8Q86SG6 692 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 ILDR1Q86SU0 546 aaPredicted RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 VGLL2Q8N8G2 317 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 CEP95Q96GE4 821 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 FOXP1Q9H334 677 aaPredicted RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 LRWD1Q9UFC0 647 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 FAM196BA6NMK8 535 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 DTNBO60941 627 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 CT47A1Q5JQC4 288 aaPredicted RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 C15orf52Q6ZUT6 534 aaKnown RBP9.36□□□□□ -0.91
PTPRD-204ENST00000397606 CYB5R4Q7L1T6 521 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 PKD2L1Q9P0L9 805 aa9.36□□□□□ -0.91
PTPRD-204ENST00000397606 SALL3Q9BXA9 1300 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 PSMA7O14818 248 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 NAP1L1P55209 391 aaKnown RBP9.35□□□□□ -0.91
PTPRD-204ENST00000397606 SP4Q02446 784 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 ARHGEF16Q5VV41 709 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 ZDHHC15Q96MV8 337 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 ALDH8A1Q9H2A2 487 aaPredicted RBP9.35□□□□□ -0.91
PTPRD-204ENST00000397606 PDCL3Q9H2J4 239 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 KCNH3Q9ULD8 1083 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 SLC16A2P36021 539 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 CETN1Q12798 172 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 ZSCAN23Q3MJ62 389 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 SV2BQ7L1I2 683 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms