RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 MYOZ2Q9NPC6 264 aa9.99□□□□□ -0.81
TDP1-203ENST00000393454 MAD2L2Q9UI95 211 aa9.99□□□□□ -0.81
TDP1-203ENST00000393454 PLIN4Q96Q06 1357 aa9.99□□□□□ -0.81
TDP1-203ENST00000393454 ELP1O95163 1332 aa9.99□□□□□ -0.81
TDP1-203ENST00000393454 TTLL1O95922 423 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 MMP1P03956 469 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 PRELPP51888 382 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 PKN1Q16512 942 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 NBPF9Q3BBW0 867 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 MTMR14Q8NCE2 650 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 SYAP1Q96A49 352 aaPredicted RBP9.98□□□□□ -0.81
TDP1-203ENST00000393454 DNAJC18Q9H819 358 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 VPS54Q9P1Q0 977 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 SIPA1L1O43166 1804 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 RAD21O60216 631 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 RPS12P25398 132 aaKnown RBP9.98□□□□□ -0.81
TDP1-203ENST00000393454 GMPSP49915 693 aaPredicted RBP9.98□□□□□ -0.81
TDP1-203ENST00000393454 MYSM1Q5VVJ2 828 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 USP17L2Q6R6M4 530 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 RASGRP2Q7LDG7 609 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 DIS3L2Q8IYB7 885 aaKnown RBP9.98□□□□□ -0.81
TDP1-203ENST00000393454 FAM151AQ8WW52 585 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 LZTS2Q9BRK4 669 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.98□□□□□ -0.81
TDP1-203ENST00000393454 ATRNL1Q5VV63 1379 aa9.98□□□□□ -0.81
TDP1-203ENST00000393454 IGKV6D-41A0A0C4DH26 115 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 PALM3A6NDB9 673 aaPredicted RBP9.97□□□□□ -0.81
TDP1-203ENST00000393454 USP17L5A8MUK1 530 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 BTBD18B2RXH4 712 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 KLRF2D3W0D1 207 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 FZD9O00144 591 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 WNT10BO00744 389 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 GDF11O95390 407 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 SCG2P13521 617 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 STK38Q15208 465 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 SF3A1Q15459 793 aaKnown RBP9.97□□□□□ -0.81
TDP1-203ENST00000393454 ABCB5Q2M3G0 1257 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 ZSCAN23Q3MJ62 389 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 PPP4R3BQ5MIZ7 849 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 TMEM63CQ9P1W3 806 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 RCOR1Q9UKL0 485 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 ISY1Q9ULR0 285 aaKnown RBP9.97□□□□□ -0.81
TDP1-203ENST00000393454 U2AF2P26368 475 aaKnown RBP eCLIP9.97□□□□□ -0.81
TDP1-203ENST00000393454 ME1P48163 572 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 NOVP48745 357 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 PFKFB3Q16875 520 aaPredicted RBP9.97□□□□□ -0.81
TDP1-203ENST00000393454 SHROOM1Q2M3G4 852 aaPredicted RBP9.97□□□□□ -0.81
TDP1-203ENST00000393454 TATDN1Q6P1N9 297 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 MICALL2Q8IY33 904 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 BICD2Q8TD16 824 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 TMEM39BQ9GZU3 492 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 CPVLQ9H3G5 476 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 VAT1LQ9HCJ6 419 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 BRMS1Q9HCU9 246 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 CABP5Q9NP86 173 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 RTEL1Q9NZ71 1219 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 CNOT7Q9UIV1 285 aaKnown RBP9.97□□□□□ -0.81
TDP1-203ENST00000393454 CLIC4Q9Y696 253 aa9.97□□□□□ -0.81
TDP1-203ENST00000393454 FRMPD2Q68DX3 1309 aaPredicted RBP9.96□□□□□ -0.81
TDP1-203ENST00000393454 MYH4Q9Y623 1939 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 GOLGA6L3A6NEY3 463 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 PDHBP11177 359 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 KRT2P35908 639 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 TNNI2P48788 182 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 MMP14P50281 582 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 ZNF280AP59817 542 aaPredicted RBP9.96□□□□□ -0.81
TDP1-203ENST00000393454 TBC1D10BQ4KMP7 808 aaPredicted RBP9.96□□□□□ -0.81
TDP1-203ENST00000393454 FKBP1CQ5VVH2 108 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 SAMD7Q7Z3H4 446 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 NOSTRINQ8IVI9 506 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 ZBED3Q96IU2 234 aaPredicted RBP9.96□□□□□ -0.81
TDP1-203ENST00000393454 FOXP1Q9H334 677 aaPredicted RBP9.96□□□□□ -0.81
TDP1-203ENST00000393454 KANSL2Q9H9L4 492 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 GPCPD1Q9NPB8 672 aa9.96□□□□□ -0.81
TDP1-203ENST00000393454 HERC5Q9UII4 1024 aaKnown RBP9.96□□□□□ -0.81
TDP1-203ENST00000393454 CNTNAP1P78357 1384 aa9.96□□□□□ -0.82
TDP1-203ENST00000393454 COL2A1P02458 1487 aaPredicted RBP9.96□□□□□ -0.82
TDP1-203ENST00000393454 ZNF541Q9H0D2 1346 aa9.96□□□□□ -0.82
TDP1-203ENST00000393454 EEF2P13639 858 aaKnown RBP9.95□□□□□ -0.82
TDP1-203ENST00000393454 LMNB1P20700 586 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 NLRP5P59047 1200 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 NR5A1Q13285 461 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 SEPT2Q15019 361 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 CCDC96Q2M329 555 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 ANO1Q5XXA6 986 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 TMEM179Q6ZVK1 233 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 MIGA2Q7L4E1 593 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 FAM83AQ86UY5 434 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 HOMER1Q86YM7 354 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 OXER1Q8TDS5 423 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 DPF2Q92785 391 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 GPKOWQ92917 476 aaPredicted RBP eCLIP9.95□□□□□ -0.822e-6■■■□□ 15.9
TDP1-203ENST00000393454 PGBD1Q96JS3 809 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 PHF20Q9BVI0 1012 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 SCAF8Q9UPN6 1271 aaKnown RBP9.95□□□□□ -0.82
TDP1-203ENST00000393454 SYCE3A1L190 88 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 H7C1D1 291 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 CYTH3O43739 400 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 EGFRP00533 1210 aa9.95□□□□□ -0.82
TDP1-203ENST00000393454 GH2P01242 217 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms