RNA–Protein interactions for RNA: ENST00000368979.6

SNX3-203, Transcript of sorting nexin 3, humanhuman

TSL 2

Gene SNX3, Length 1,537 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-203ENST00000368979 PALM3A6NDB9 673 aaPredicted RBP27.72■■■□□ 2.03
SNX3-203ENST00000368979 DDX11L8A8MPP1 907 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 UBE2Q2LH0YL09 131 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 PRPF3O43395 683 aaKnown RBP27.72■■■□□ 2.03
SNX3-203ENST00000368979 GNAQP50148 359 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 JAG1P78504 1218 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 RESTQ13127 1097 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 FERMT3Q86UX7 667 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 LRRC47Q8N1G4 583 aaKnown RBP27.72■■■□□ 2.03
SNX3-203ENST00000368979 CHAMP1Q96JM3 812 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 DEFB129Q9H1M3 183 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 ADARB2Q9NS39 739 aaKnown RBP27.72■■■□□ 2.03
SNX3-203ENST00000368979 SEPT2Q15019 361 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 STAG2Q8N3U4 1231 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 MKL1Q969V6 931 aa27.72■■■□□ 2.03
SNX3-203ENST00000368979 GH2P01242 217 aa27.71■■■□□ 2.03
SNX3-203ENST00000368979 SNHG28P0DPA3 235 aa27.71■■■□□ 2.03
SNX3-203ENST00000368979 GUCY1B3Q02153 619 aa27.71■■■□□ 2.03
SNX3-203ENST00000368979 MIGA2Q7L4E1 593 aa27.71■■■□□ 2.03
SNX3-203ENST00000368979 RASGRP2Q7LDG7 609 aa27.71■■■□□ 2.03
SNX3-203ENST00000368979 L3MBTL3Q96JM7 780 aaPredicted RBP27.71■■■□□ 2.03
SNX3-203ENST00000368979 CABP5Q9NP86 173 aa27.71■■■□□ 2.03
SNX3-203ENST00000368979 GGA3Q9NZ52 723 aa27.71■■■□□ 2.03
SNX3-203ENST00000368979 MYH6P13533 1939 aa27.7■■■□□ 2.03
SNX3-203ENST00000368979 PDHBP11177 359 aa27.7■■■□□ 2.02
SNX3-203ENST00000368979 EEF2P13639 858 aaKnown RBP27.7■■■□□ 2.02
SNX3-203ENST00000368979 ICA1Q05084 483 aa27.7■■■□□ 2.02
SNX3-203ENST00000368979 MCTP1Q6DN14 999 aa27.7■■■□□ 2.02
SNX3-203ENST00000368979 OTUD7BQ6GQQ9 843 aa27.7■■■□□ 2.02
SNX3-203ENST00000368979 DPY19L2Q6NUT2 758 aa27.7■■■□□ 2.02
SNX3-203ENST00000368979 ZSCAN16Q9H4T2 348 aaPredicted RBP27.7■■■□□ 2.02
SNX3-203ENST00000368979 GJB4Q9NTQ9 266 aa27.7■■■□□ 2.02
SNX3-203ENST00000368979 MTMR7Q9Y216 660 aa27.7■■■□□ 2.02
SNX3-203ENST00000368979 PARP1P09874 1014 aaKnown RBP27.69■■■□□ 2.02
SNX3-203ENST00000368979 PKN1Q16512 942 aa27.69■■■□□ 2.02
SNX3-203ENST00000368979 SIAH1Q8IUQ4 282 aa27.69■■■□□ 2.02
SNX3-203ENST00000368979 LZTS2Q9BRK4 669 aa27.69■■■□□ 2.02
SNX3-203ENST00000368979 PITPNM2Q9BZ72 1349 aa27.68■■■□□ 2.02
SNX3-203ENST00000368979 AKAP17AQ02040 695 aaKnown RBP27.68■■■□□ 2.02
SNX3-203ENST00000368979 USP17L5A8MUK1 530 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 GOLGA6L22H0YM25 854 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 SLC35G1Q2M3R5 365 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 FOXD4L6Q3SYB3 417 aaPredicted RBP27.67■■■□□ 2.02
SNX3-203ENST00000368979 KRT40Q6A162 431 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 USP17L2Q6R6M4 530 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 FOXD4L3Q6VB84 417 aaPredicted RBP27.67■■■□□ 2.02
SNX3-203ENST00000368979 ZBTB21Q9ULJ3 1066 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 PPP2R3BQ9Y5P8 575 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 V9GY48 417 aaPredicted RBP27.67■■■□□ 2.02
SNX3-203ENST00000368979 MYH15Q9Y2K3 1946 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 CAP2P40123 477 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 ATP2B2Q01814 1243 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 ASPRV1Q53RT3 343 aa27.67■■■□□ 2.02
SNX3-203ENST00000368979 RBM27Q9P2N5 1060 aaKnown RBP27.67■■■□□ 2.02
SNX3-203ENST00000368979 ATAD5Q96QE3 1844 aa27.66■■■□□ 2.02
SNX3-203ENST00000368979 PHF20L1A8MW92 1017 aa27.66■■■□□ 2.02
SNX3-203ENST00000368979 GOLGA8HP0CJ92 632 aa27.66■■■□□ 2.02
SNX3-203ENST00000368979 TRIM29Q14134 588 aa27.66■■■□□ 2.02
SNX3-203ENST00000368979 SPZ1Q9BXG8 430 aa27.66■■■□□ 2.02
SNX3-203ENST00000368979 SYNPO2Q9UMS6 1093 aa27.66■■■□□ 2.02
SNX3-203ENST00000368979 KLRF2D3W0D1 207 aa27.65■■■□□ 2.02
SNX3-203ENST00000368979 PTMSP20962 102 aa27.65■■■□□ 2.02
SNX3-203ENST00000368979 SMARCA1P28370 1054 aa27.65■■■□□ 2.02
SNX3-203ENST00000368979 DNM1Q05193 864 aaKnown RBP27.65■■■□□ 2.02
SNX3-203ENST00000368979 NBPF12Q5TAG4 269 aaPredicted RBP27.65■■■□□ 2.02
SNX3-203ENST00000368979 UTRNP46939 3433 aa27.64■■■□□ 2.02
SNX3-203ENST00000368979 GLTPD2A6NH11 291 aa27.64■■■□□ 2.02
SNX3-203ENST00000368979 CYTH3O43739 400 aa27.64■■■□□ 2.02
SNX3-203ENST00000368979 ZNF543Q08ER8 600 aa27.64■■■□□ 2.02
SNX3-203ENST00000368979 hCG_1642624A0A1W2PR95 340 aa27.63■■■□□ 2.01
SNX3-203ENST00000368979 KIF23Q02241 960 aaPredicted RBP27.63■■■□□ 2.01
SNX3-203ENST00000368979 PFKFB3Q16875 520 aaPredicted RBP27.63■■■□□ 2.01
SNX3-203ENST00000368979 FAM173BQ6P4H8 233 aa27.63■■■□□ 2.01
SNX3-203ENST00000368979 GMCL1P1Q8NEA9 526 aa27.63■■■□□ 2.01
SNX3-203ENST00000368979 CNPY2Q9Y2B0 182 aa27.63■■■□□ 2.01
SNX3-203ENST00000368979 SCG2P13521 617 aa27.62■■■□□ 2.01
SNX3-203ENST00000368979 SHISA4Q96DD7 197 aa27.62■■■□□ 2.01
SNX3-203ENST00000368979 HOOK2Q96ED9 719 aa27.62■■■□□ 2.01
SNX3-203ENST00000368979 FRMPD2Q68DX3 1309 aaPredicted RBP27.62■■■□□ 2.01
SNX3-203ENST00000368979 SCN4AP35499 1836 aa27.62■■■□□ 2.01
SNX3-203ENST00000368979 MMP1P03956 469 aa27.62■■■□□ 2.01
SNX3-203ENST00000368979 DCAF15Q66K64 600 aa27.62■■■□□ 2.01
SNX3-203ENST00000368979 DCAF4Q8WV16 495 aa27.62■■■□□ 2.01
SNX3-203ENST00000368979 LMBRD1Q9NUN5 540 aa27.62■■■□□ 2.01
SNX3-203ENST00000368979 SSC5DA1L4H1 1573 aa27.61■■■□□ 2.01
SNX3-203ENST00000368979 KIF28PB7ZC32 967 aa27.61■■■□□ 2.01
SNX3-203ENST00000368979 ASNSP08243 561 aa27.61■■■□□ 2.01
SNX3-203ENST00000368979 XBP1P17861 261 aa27.61■■■□□ 2.01
SNX3-203ENST00000368979 GPATCH4Q5T3I0 446 aaKnown RBP27.61■■■□□ 2.01
SNX3-203ENST00000368979 TMEM87AQ8NBN3 555 aa27.61■■■□□ 2.01
SNX3-203ENST00000368979 RIOX1Q9H6W3 641 aa27.61■■■□□ 2.01
SNX3-203ENST00000368979 ARHGEF10LQ9HCE6 1279 aa27.61■■■□□ 2.01
SNX3-203ENST00000368979 GINM1Q9NU53 330 aa27.61■■■□□ 2.01
SNX3-203ENST00000368979 WDR90Q96KV7 1748 aa27.6■■■□□ 2.01
SNX3-203ENST00000368979 TCHHQ07283 1943 aa27.6■■■□□ 2.01
SNX3-203ENST00000368979 A0A1W2PRG0 241 aa27.6■■■□□ 2.01
SNX3-203ENST00000368979 KRT85P78386 507 aa27.6■■■□□ 2.01
SNX3-203ENST00000368979 SLFN13Q68D06 897 aa27.6■■■□□ 2.01
SNX3-203ENST00000368979 USP50Q70EL3 339 aaPredicted RBP27.6■■■□□ 2.01
SNX3-203ENST00000368979 BRAPQ7Z569 592 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms