RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 FDPSP14324 419 aaKnown RBP23.17■■□□□ 1.3
CLN3-205ENST00000359984 INPP5BP32019 993 aa23.17■■□□□ 1.3
CLN3-205ENST00000359984 CMTR1Q8N1G2 835 aaKnown RBP23.17■■□□□ 1.3
CLN3-205ENST00000359984 GLIS2Q9BZE0 524 aaPredicted RBP23.17■■□□□ 1.3
CLN3-205ENST00000359984 CLEC11AQ9Y240 323 aa23.17■■□□□ 1.3
CLN3-205ENST00000359984 ASNSP08243 561 aa23.16■■□□□ 1.3
CLN3-205ENST00000359984 IFNAR1P17181 557 aa23.16■■□□□ 1.3
CLN3-205ENST00000359984 RASGRP2Q7LDG7 609 aa23.16■■□□□ 1.3
CLN3-205ENST00000359984 PHKBQ93100 1093 aa23.16■■□□□ 1.3
CLN3-205ENST00000359984 PLEKHA8P1O95397 391 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 KIF5BP33176 963 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 PKP1Q13835 747 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 TMTC3Q6ZXV5 915 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 CDC37L1Q7L3B6 337 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 CCDC82Q8N4S0 544 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 CDCA5Q96FF9 252 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 WRNIP1Q96S55 665 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 MAD2L2Q9UI95 211 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 A0A1W2PRG0 241 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 USP17L5A8MUK1 530 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 FUT2Q10981 343 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 NBPF11Q86T75 865 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 STAG2Q8N3U4 1231 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 KLRG1Q96E93 195 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 NMRK2Q9NPI5 230 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 GINM1Q9NU53 330 aa23.15■■□□□ 1.3
CLN3-205ENST00000359984 ORC3Q9UBD5 711 aaPredicted RBP23.15■■□□□ 1.3
CLN3-205ENST00000359984 PALM3A6NDB9 673 aaPredicted RBP23.14■■□□□ 1.29
CLN3-205ENST00000359984 PDHBP11177 359 aa23.14■■□□□ 1.29
CLN3-205ENST00000359984 SYT1P21579 422 aa23.14■■□□□ 1.29
CLN3-205ENST00000359984 PRKG1Q13976 671 aa23.14■■□□□ 1.29
CLN3-205ENST00000359984 USP17L2Q6R6M4 530 aa23.14■■□□□ 1.29
CLN3-205ENST00000359984 FAM184AQ8NB25 1140 aa23.14■■□□□ 1.29
CLN3-205ENST00000359984 ACER1Q8TDN7 264 aa23.14■■□□□ 1.29
CLN3-205ENST00000359984 ZNF526Q8TF50 670 aaPredicted RBP23.14■■□□□ 1.29
CLN3-205ENST00000359984 USP2O75604 605 aaPredicted RBP23.13■■□□□ 1.29
CLN3-205ENST00000359984 SNHG28P0DPA3 235 aa23.13■■□□□ 1.29
CLN3-205ENST00000359984 MAP1SQ66K74 1059 aaPredicted RBP23.13■■□□□ 1.29
CLN3-205ENST00000359984 CCDC84Q86UT8 332 aaPredicted RBP23.13■■□□□ 1.29
CLN3-205ENST00000359984 SRBD1Q8N5C6 995 aaKnown RBP23.13■■□□□ 1.29
CLN3-205ENST00000359984 ARHGEF10LQ9HCE6 1279 aa23.13■■□□□ 1.29
CLN3-205ENST00000359984 MYH4Q9Y623 1939 aa23.13■■□□□ 1.29
CLN3-205ENST00000359984 FMNL1O95466 1100 aaPredicted RBP23.13■■□□□ 1.29
CLN3-205ENST00000359984 PARP1P09874 1014 aaKnown RBP23.13■■□□□ 1.29
CLN3-205ENST00000359984 ECE1P42892 770 aa23.13■■□□□ 1.29
CLN3-205ENST00000359984 SSRP1Q08945 709 aaKnown RBP23.13■■□□□ 1.29
CLN3-205ENST00000359984 ZKSCAN4Q969J2 545 aaPredicted RBP23.13■■□□□ 1.29
CLN3-205ENST00000359984 SLC26A6Q9BXS9 759 aa23.13■■□□□ 1.29
CLN3-205ENST00000359984 GOLGA8HP0CJ92 632 aa23.12■■□□□ 1.29
CLN3-205ENST00000359984 GNAQP50148 359 aa23.12■■□□□ 1.29
CLN3-205ENST00000359984 NUCB2P80303 420 aa23.12■■□□□ 1.29
CLN3-205ENST00000359984 LARP1BQ659C4 914 aaKnown RBP23.12■■□□□ 1.29
CLN3-205ENST00000359984 SCYL3Q8IZE3 742 aa23.12■■□□□ 1.29
CLN3-205ENST00000359984 SYNPO2Q9UMS6 1093 aa23.12■■□□□ 1.29
CLN3-205ENST00000359984 ZDHHC9Q9Y397 364 aa23.12■■□□□ 1.29
CLN3-205ENST00000359984 GMCL1P1Q8NEA9 526 aa23.11■■□□□ 1.29
CLN3-205ENST00000359984 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.11■■□□□ 1.29
CLN3-205ENST00000359984 TMX2Q9Y320 296 aa23.11■■□□□ 1.29
CLN3-205ENST00000359984 STK36Q9NRP7 1315 aa23.11■■□□□ 1.29
CLN3-205ENST00000359984 F5H6K3 240 aa23.11■■□□□ 1.29
CLN3-205ENST00000359984 PDCP20941 246 aa23.11■■□□□ 1.29
CLN3-205ENST00000359984 KLRC3Q07444 240 aa23.11■■□□□ 1.29
CLN3-205ENST00000359984 SLFN13Q68D06 897 aa23.11■■□□□ 1.29
CLN3-205ENST00000359984 KIF3AQ9Y496 699 aa23.11■■□□□ 1.29
CLN3-205ENST00000359984 KLRF2D3W0D1 207 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 UBE2Q2LH0YL09 131 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 STX6O43752 255 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 PPP1R12BO60237 982 aaPredicted RBP23.1■■□□□ 1.29
CLN3-205ENST00000359984 NF2P35240 595 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 ASPRV1Q53RT3 343 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 LDHDQ86WU2 507 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 TRIM22Q8IYM9 498 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 RNF26Q9BY78 433 aaPredicted RBP23.1■■□□□ 1.29
CLN3-205ENST00000359984 FRMPD2Q68DX3 1309 aaPredicted RBP23.1■■□□□ 1.29
CLN3-205ENST00000359984 CNTNAP5Q8WYK1 1306 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 ATAD5Q96QE3 1844 aa23.1■■□□□ 1.29
CLN3-205ENST00000359984 RAD21O60216 631 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 NDUFB10O96000 172 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 ZNF543Q08ER8 600 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 SLC35G1Q2M3R5 365 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 NOL9Q5SY16 702 aaKnown RBP23.09■■□□□ 1.29
CLN3-205ENST00000359984 LZTS2Q9BRK4 669 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 PICK1Q9NRD5 415 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 BRD1O95696 1058 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 DCAF4Q8WV16 495 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 AIFM3Q96NN9 605 aa23.09■■□□□ 1.29
CLN3-205ENST00000359984 V9GY48 417 aaPredicted RBP23.09■■□□□ 1.29
CLN3-205ENST00000359984 PRPF3O43395 683 aaKnown RBP23.08■■□□□ 1.29
CLN3-205ENST00000359984 PTPRAP18433 802 aa23.08■■□□□ 1.29
CLN3-205ENST00000359984 FOSBP53539 338 aa23.08■■□□□ 1.29
CLN3-205ENST00000359984 MAP3K9P80192 1104 aa23.08■■□□□ 1.29
CLN3-205ENST00000359984 CPVLQ9H3G5 476 aa23.08■■□□□ 1.29
CLN3-205ENST00000359984 GPCPD1Q9NPB8 672 aa23.08■■□□□ 1.29
CLN3-205ENST00000359984 MTMR6Q9Y217 621 aa23.08■■□□□ 1.29
CLN3-205ENST00000359984 TRAF5O00463 557 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 CYTH3O43739 400 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 CCDC96Q2M329 555 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 KIAA1755Q5JYT7 1200 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 FOXD4L5Q5VV16 416 aaPredicted RBP23.07■■□□□ 1.28
CLN3-205ENST00000359984 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms