RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CASKIN1Q8WXD9 1431 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 ASIC3Q9UHC3 531 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 AOC3Q16853 763 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 HAUS1Q96CS2 278 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 SLC10A4Q96EP9 437 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 SASH1O94885 1247 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 TYRO3Q06418 890 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 NOLC1Q14978 699 aaKnown RBP eCLIP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 FAM149B1Q96BN6 582 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 CD58P19256 250 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 THOC1Q96FV9 657 aaKnown RBP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 LRRC27Q9C0I9 530 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 SLC52A2Q9HAB3 445 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 PHKA1P46020 1223 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 GUCY2FP51841 1108 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 MXD3Q9BW11 206 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 ANGEL1Q9UNK9 670 aaKnown RBP8.17□□□□□ -1.1
VPS13A-202ENST00000357409 ZBTB1Q9Y2K1 713 aa8.17□□□□□ -1.1
VPS13A-202ENST00000357409 CTAGE9A4FU28 777 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 ZBTB24O43167 697 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 SLU7O95391 586 aaKnown RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 ATF7P17544 494 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 SMTNP53814 917 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 MTX1Q13505 466 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 RRAGAQ7L523 313 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 C10orf67Q8IYJ2 551 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PDCD6IPQ8WUM4 868 aaKnown RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 SCYL1Q96KG9 808 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 ZBTB7BO15156 539 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PTH1RQ03431 593 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 IFI16Q16666 785 aaKnown RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PLEKHM2Q8IWE5 1019 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 RPS6KC1Q96S38 1066 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 CSRNP1Q96S65 589 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 METTL22Q9BUU2 404 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 GJB4Q9NTQ9 266 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PLEKHG3A1L390 1219 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PDE1CQ14123 709 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 CDC37L1Q7L3B6 337 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 KDELC2Q7Z4H8 507 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PPP1R12CQ9BZL4 782 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 TACC3Q9Y6A5 838 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 GOLGA6L9A6NEM1 432 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 MNAT1P51948 309 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 IRX4P78413 519 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 ITIH3Q06033 890 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PROSER3Q2NL68 480 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 TTC38Q5R3I4 469 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PPM1KQ8N3J5 372 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 HPS4Q9NQG7 708 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 SCHIP1Q9P0W5 487 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 STK38LQ9Y2H1 464 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 ZNF467Q7Z7K2 595 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PLA2G4DQ86XP0 818 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 CARD10Q9BWT7 1032 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 CAMSAP2Q08AD1 1489 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 POLGP54098 1239 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 PODNQ7Z5L7 613 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 SDCCAG8Q86SQ7 713 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 CCDC84Q86UT8 332 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 CCDC170Q8IYT3 715 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 SUPT20HQ8NEM7 779 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 U2AF1L4Q8WU68 220 aaKnown RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 CNKSR1Q969H4 720 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 GAS7O60861 476 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 USP37Q86T82 979 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 FBXO11Q86XK2 927 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 KCNG4Q8TDN1 519 aa8.16□□□□□ -1.1
VPS13A-202ENST00000357409 RAVER2Q9HCJ3 691 aaKnown RBP8.16□□□□□ -1.1
VPS13A-202ENST00000357409 RPS6KB1P23443 525 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 PABPC4Q13310 644 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS13A-202ENST00000357409 NLRP7Q8WX94 980 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 ARHGEF2Q92974 986 aaKnown RBP8.15□□□□□ -1.1
VPS13A-202ENST00000357409 TROQ12816 1431 aaPredicted RBP8.15□□□□□ -1.1
VPS13A-202ENST00000357409 ESYT2A0FGR8 921 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 BRD3Q15059 726 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 ARMCX5Q6P1M9 558 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 UBN1Q9NPG3 1134 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 RNF181Q9P0P0 153 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 A0A0G2JLW4 131 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 TACO1Q9BSH4 297 aaKnown RBP8.15□□□□□ -1.1
VPS13A-202ENST00000357409 LUC7L2Q9Y383 392 aaKnown RBP8.15□□□□□ -1.1
VPS13A-202ENST00000357409 PSMC5P62195 406 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 GRAMD1CQ8IYS0 662 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 IFNL3Q8IZI9 196 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 GJA10Q969M2 543 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 CHRNA5P30532 468 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 SYCP2LQ5T4T6 812 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 RAPH1Q70E73 1250 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 POMGNT1Q8WZA1 660 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 LPIN2Q92539 896 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 DACT3Q96B18 629 aaPredicted RBP8.15□□□□□ -1.1
VPS13A-202ENST00000357409 USP17L8P0C7I0 530 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 CCDC172P0C7W6 258 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 POLR2FP61218 127 aaKnown RBP8.15□□□□□ -1.1
VPS13A-202ENST00000357409 KRT33BQ14525 404 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 GDAP1Q8TB36 358 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 NSMCE1Q8WV22 266 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 PCDH11XQ9BZA7 1347 aa8.15□□□□□ -1.1
VPS13A-202ENST00000357409 PCDH11YQ9BZA8 1340 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms