RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 TBC1D1Q86TI0 1168 aaPredicted RBP13.37□□□□□ -0.27
COL12A1-202ENST00000345356 KSR1Q8IVT5 923 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 KLHDC4Q8TBB5 520 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 LSG1Q9H089 658 aaKnown RBP13.37□□□□□ -0.27
COL12A1-202ENST00000345356 PPFIA2O75334 1257 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 BAG3O95817 575 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 GNA11P29992 359 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 CCDC144BQ3MJ40 725 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 ANKIB1Q9P2G1 1089 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 TBC1D8O95759 1140 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 FAM212AQ96EL1 285 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 ZNF274Q96GC6 653 aaPredicted RBP13.37□□□□□ -0.27
COL12A1-202ENST00000345356 DNAI2Q9GZS0 605 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 RTEL1Q9NZ71 1219 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 CD2APQ9Y5K6 639 aa13.37□□□□□ -0.27
COL12A1-202ENST00000345356 HSP90AA5PQ58FG0 334 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 PLA2G4DQ86XP0 818 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 SPDL1Q96EA4 605 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 ZFYVE9O95405 1425 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 GAS8O95995 478 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 CCHCR1Q8TD31 782 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 MORC4Q8TE76 937 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 PRDM11Q9NQV5 511 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 PLB1Q6P1J6 1458 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 MAGEB6P1A0A0J9YX57 407 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 TMED1Q13445 227 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 ANKLE2Q86XL3 938 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 KBTBD3Q8NAB2 608 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 SMC1BQ8NDV3 1235 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 RRP36Q96EU6 259 aaKnown RBP13.36□□□□□ -0.27
COL12A1-202ENST00000345356 PSMD1Q99460 953 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 Q9H521 79 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 VPS37BQ9H9H4 285 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 ACEP12821 1306 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 COPB1P53618 953 aaKnown RBP13.36□□□□□ -0.27
COL12A1-202ENST00000345356 TIMM10P62072 90 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 THOC2Q8NI27 1593 aaKnown RBP13.36□□□□□ -0.27
COL12A1-202ENST00000345356 A0A0D9SFI3 127 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 SH3GL3Q99963 347 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 IRAK4Q9NWZ3 460 aa13.36□□□□□ -0.27
COL12A1-202ENST00000345356 IDI1Q13907 227 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 FTOQ9C0B1 505 aaKnown RBP eCLIP13.35□□□□□ -0.27
COL12A1-202ENST00000345356 SKIP12755 728 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 PROSER2Q86WR7 435 aaPredicted RBP13.35□□□□□ -0.27
COL12A1-202ENST00000345356 FBXO41Q8TF61 875 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 CREB3O43889 395 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 GGCXP38435 758 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 ARL1P40616 181 aaPredicted RBP13.35□□□□□ -0.27
COL12A1-202ENST00000345356 ST5P78524 1137 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 EHHADHQ08426 723 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 SLMAPQ14BN4 828 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 TEX2Q8IWB9 1127 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 FRMD4BQ9Y2L6 1034 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 ZNF521Q96K83 1311 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 CC2D2AQ9P2K1 1620 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 SCRN1Q12765 414 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 ZBTB17Q13105 803 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 SLC39A6Q13433 755 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 PLS1Q14651 629 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 MAP3K21Q5TCX8 1036 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 CLEC17AQ6ZS10 378 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 A0A1W2PP64 1363 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 SPATA31E1Q6ZUB1 1445 aa13.35□□□□□ -0.27
COL12A1-202ENST00000345356 H7C1D1 291 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 CHL1O00533 1208 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 MBD4O95243 580 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 LDHCP07864 332 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 RANBP1P43487 201 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 PPP2R5EQ16537 467 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 ZNF652Q9Y2D9 606 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 EVI5O60447 810 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 NBPF9Q3BBW0 867 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 DYMQ7RTS9 669 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 LSM14BQ9BX40 385 aaKnown RBP13.34□□□□□ -0.27
COL12A1-202ENST00000345356 ATP1A3P13637 1013 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 ADAT2Q7Z6V5 191 aaKnown RBP13.34□□□□□ -0.27
COL12A1-202ENST00000345356 NOSTRINQ8IVI9 506 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 GPAA1O43292 621 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 RAPGEF3O95398 923 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 TRPC3Q13507 836 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 PPP1R21Q6ZMI0 780 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 KCNF1Q9H3M0 494 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 KIAA0586Q9BVV6 1533 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 SLC7A5Q01650 507 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 FAM69CQ0P6D2 419 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 SCYL3Q8IZE3 742 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.34□□□□□ -0.27
COL12A1-202ENST00000345356 EPSTI1Q96J88 318 aa13.34□□□□□ -0.27
COL12A1-202ENST00000345356 NOVA2Q9UNW9 492 aaKnown RBP13.34□□□□□ -0.27
COL12A1-202ENST00000345356 SLFN14P0C7P3 912 aa13.33□□□□□ -0.27
COL12A1-202ENST00000345356 CNOT10Q9H9A5 744 aaKnown RBP13.33□□□□□ -0.27
COL12A1-202ENST00000345356 RCOR1Q9UKL0 485 aa13.33□□□□□ -0.27
COL12A1-202ENST00000345356 AGTPBP1Q9UPW5 1226 aa13.33□□□□□ -0.27
COL12A1-202ENST00000345356 GPATCH8Q9UKJ3 1502 aaKnown RBP13.33□□□□□ -0.28
COL12A1-202ENST00000345356 IFT140Q96RY7 1462 aa13.33□□□□□ -0.28
COL12A1-202ENST00000345356 FAM170AA1A519 330 aa13.33□□□□□ -0.28
COL12A1-202ENST00000345356 HMGB1P1B2RPK0 211 aaPredicted RBP13.33□□□□□ -0.28
COL12A1-202ENST00000345356 CXCR5P32302 372 aa13.33□□□□□ -0.28
COL12A1-202ENST00000345356 RASSF7Q02833 373 aa13.33□□□□□ -0.28
COL12A1-202ENST00000345356 UNC5CLQ8IV45 518 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms