RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 VIL1P09327 827 aaKnown RBP14.74□□□□□ -0.05
CLK3-201ENST00000345005 PTGER2P43116 358 aa14.74□□□□□ -0.05
CLK3-201ENST00000345005 CEBPZQ03701 1054 aaKnown RBP14.74□□□□□ -0.05
CLK3-201ENST00000345005 MAP3K11Q16584 847 aa14.74□□□□□ -0.05
CLK3-201ENST00000345005 TPRNQ4KMQ1 711 aa14.74□□□□□ -0.05
CLK3-201ENST00000345005 TAF3Q5VWG9 929 aa14.74□□□□□ -0.05
CLK3-201ENST00000345005 RSBN1LQ6PCB5 846 aaPredicted RBP14.74□□□□□ -0.05
CLK3-201ENST00000345005 EHD4Q9H223 541 aa14.74□□□□□ -0.05
CLK3-201ENST00000345005 POLR3EQ9NVU0 708 aa14.74□□□□□ -0.05
CLK3-201ENST00000345005 V9GY48 417 aaPredicted RBP14.74□□□□□ -0.05
CLK3-201ENST00000345005 PLIN4Q96Q06 1357 aa14.74□□□□□ -0.05
CLK3-201ENST00000345005 UTRNP46939 3433 aa14.74□□□□□ -0.05
CLK3-201ENST00000345005 YEATS4O95619 227 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 DMTNQ08495 405 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 GRM4Q14833 912 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 PGBD1Q96JS3 809 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 TMEM47Q9BQJ4 181 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.73□□□□□ -0.05
CLK3-201ENST00000345005 DDX19AQ9NUU7 478 aaKnown RBP14.73□□□□□ -0.05
CLK3-201ENST00000345005 ZNRF3Q9ULT6 936 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 STX8Q9UNK0 236 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 CD2APQ9Y5K6 639 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 MYH4Q9Y623 1939 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 UBE2Q2LH0YL09 131 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 TOP1P11387 765 aaKnown RBP14.73□□□□□ -0.05
CLK3-201ENST00000345005 NFIAQ12857 509 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 PKN1Q16512 942 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 CFAP100Q494V2 611 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 NIM1KQ8IY84 436 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 SRBD1Q8N5C6 995 aaKnown RBP14.73□□□□□ -0.05
CLK3-201ENST00000345005 LZTS2Q9BRK4 669 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 FOXP1Q9H334 677 aaPredicted RBP14.73□□□□□ -0.05
CLK3-201ENST00000345005 HDAC9Q9UKV0 1011 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 SIPA1L1O43166 1804 aa14.73□□□□□ -0.05
CLK3-201ENST00000345005 CNTNAP5Q8WYK1 1306 aa14.72□□□□□ -0.05
CLK3-201ENST00000345005 PSMD14O00487 310 aa14.72□□□□□ -0.05
CLK3-201ENST00000345005 NOVP48745 357 aa14.72□□□□□ -0.05
CLK3-201ENST00000345005 STK38Q15208 465 aa14.72□□□□□ -0.05
CLK3-201ENST00000345005 KCNG4Q8TDN1 519 aa14.72□□□□□ -0.05
CLK3-201ENST00000345005 SGIP1Q9BQI5 828 aa14.72□□□□□ -0.05
CLK3-201ENST00000345005 NUP62CLQ9H1M0 184 aa14.72□□□□□ -0.05
CLK3-201ENST00000345005 TTC12Q9H892 705 aaPredicted RBP14.72□□□□□ -0.05
CLK3-201ENST00000345005 GREB1LQ9C091 1923 aaPredicted RBP14.72□□□□□ -0.05
CLK3-201ENST00000345005 RAD17O75943 681 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 SF3A1Q15459 793 aaKnown RBP14.71□□□□□ -0.05
CLK3-201ENST00000345005 PPP4R3BQ5MIZ7 849 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 ANO1Q5XXA6 986 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 NOSTRINQ8IVI9 506 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 PDCL2Q8N4E4 241 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 LINC00301Q8NCQ3 95 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 BICD2Q8TD16 824 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 CEP95Q96GE4 821 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 CCDC17Q96LX7 622 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 GMLQ99445 158 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 FEZ1Q99689 392 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 FTOQ9C0B1 505 aaKnown RBP eCLIP14.71□□□□□ -0.05
CLK3-201ENST00000345005 PI4KBQ9UBF8 816 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 FAM198AQ9UFP1 575 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 KCNJ14Q9UNX9 436 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 PCDHAC2Q9Y5I4 1007 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 COL4A5P29400 1685 aa14.71□□□□□ -0.05
CLK3-201ENST00000345005 ENTPD3O75355 529 aa14.71□□□□□ -0.06
CLK3-201ENST00000345005 ME1P48163 572 aa14.71□□□□□ -0.06
CLK3-201ENST00000345005 FOXP4Q8IVH2 680 aaPredicted RBP14.71□□□□□ -0.06
CLK3-201ENST00000345005 DIS3L2Q8IYB7 885 aaKnown RBP14.71□□□□□ -0.06
CLK3-201ENST00000345005 OGFOD1Q8N543 542 aa14.71□□□□□ -0.06
CLK3-201ENST00000345005 MTMR4Q9NYA4 1195 aa14.71□□□□□ -0.06
CLK3-201ENST00000345005 PPP1R1BQ9UD71 204 aaPredicted RBP14.71□□□□□ -0.06
CLK3-201ENST00000345005 MAD2L2Q9UI95 211 aa14.71□□□□□ -0.06
CLK3-201ENST00000345005 CLIC4Q9Y696 253 aa14.71□□□□□ -0.06
CLK3-201ENST00000345005 PALM3A6NDB9 673 aaPredicted RBP14.7□□□□□ -0.06
CLK3-201ENST00000345005 BTBD18B2RXH4 712 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 SPTLC2O15270 562 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 NEMFO60524 1076 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 LIG1P18858 919 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 SHMT1P34896 483 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 TCP10Q12799 353 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 ZFPM1Q8IX07 1006 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 AGBL3Q8NEM8 1001 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 PRMT6Q96LA8 375 aaPredicted RBP14.7□□□□□ -0.06
CLK3-201ENST00000345005 PHF20Q9BVI0 1012 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 TAOK3Q9H2K8 898 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 TDRD3Q9H7E2 651 aaKnown RBP14.7□□□□□ -0.06
CLK3-201ENST00000345005 TMOD2Q9NZR1 351 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 PAXBP1Q9Y5B6 917 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 ARFGEF1Q9Y6D6 1849 aa14.7□□□□□ -0.06
CLK3-201ENST00000345005 COL2A1P02458 1487 aaPredicted RBP14.69□□□□□ -0.06
CLK3-201ENST00000345005 IGKV6D-41A0A0C4DH26 115 aa14.69□□□□□ -0.06
CLK3-201ENST00000345005 CTIFO43310 598 aaKnown RBP14.69□□□□□ -0.06
CLK3-201ENST00000345005 PARP1P09874 1014 aaKnown RBP14.69□□□□□ -0.06
CLK3-201ENST00000345005 SCG2P13521 617 aa14.69□□□□□ -0.06
CLK3-201ENST00000345005 CACNB3P54284 484 aa14.69□□□□□ -0.06
CLK3-201ENST00000345005 PFKFB3Q16875 520 aaPredicted RBP14.69□□□□□ -0.06
CLK3-201ENST00000345005 ADALQ6DHV7 355 aa14.69□□□□□ -0.06
CLK3-201ENST00000345005 ZSCAN29Q8IWY8 852 aaPredicted RBP14.69□□□□□ -0.06
CLK3-201ENST00000345005 JDP2Q8WYK2 163 aa14.69□□□□□ -0.06
CLK3-201ENST00000345005 ZNF830Q96NB3 372 aaPredicted RBP14.69□□□□□ -0.06
CLK3-201ENST00000345005 TRIM34Q9BYJ4 488 aa14.69□□□□□ -0.06
CLK3-201ENST00000345005 BRMS1Q9HCU9 246 aa14.69□□□□□ -0.06
CLK3-201ENST00000345005 VPS54Q9P1Q0 977 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms