RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 CUL4AQ13619 759 aa19.34■□□□□ 0.69
PDLIM1-201ENST00000329399 IMMTQ16891 758 aaKnown RBP19.34■□□□□ 0.69
PDLIM1-201ENST00000329399 CHMP4CQ96CF2 233 aa19.34■□□□□ 0.69
PDLIM1-201ENST00000329399 PDRG1Q9NUG6 133 aa19.34■□□□□ 0.69
PDLIM1-201ENST00000329399 ZSWIM8A7E2V4 1837 aa19.33■□□□□ 0.69
PDLIM1-201ENST00000329399 FGAP02671 866 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 BCRP11274 1271 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 PDIA4P13667 645 aaKnown RBP19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 DDIT3P35638 169 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 CTDSPL2Q05D32 466 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 OTOP1Q7RTM1 612 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 NKX2-3Q8TAU0 364 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 ABHD8Q96I13 439 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 NAPBQ9H115 298 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 ASCC2Q9H1I8 757 aaPredicted RBP19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 SLC45A1Q9Y2W3 748 aa19.33■□□□□ 0.68
PDLIM1-201ENST00000329399 C19orf81C9J6K1 198 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 PPARAQ07869 468 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 TMEM179Q6ZVK1 233 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 AMOTL1Q8IY63 956 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 TMX3Q96JJ7 454 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 NEK1Q96PY6 1258 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 P2RX7Q99572 595 aaKnown RBP19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 UPF3BQ9BZI7 483 aaKnown RBP19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 NACAP1Q9BZK3 213 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 KIAA1683Q9H0B3 1180 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 ROBO3Q96MS0 1386 aa19.32■□□□□ 0.68
PDLIM1-201ENST00000329399 CAPN15O75808 1086 aa19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 CYP21A2P08686 494 aa19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 RPS6KB1P23443 525 aa19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 LACTBP83111 547 aaPredicted RBP19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 USP17L2Q6R6M4 530 aa19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 CCDC17Q96LX7 622 aa19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 PARK7Q99497 189 aaKnown RBP19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 TRIM17Q9Y577 477 aa19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 LOC285556D6RIA3 1793 aa19.31■□□□□ 0.68
PDLIM1-201ENST00000329399 MKI67P46013 3256 aaKnown RBP19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 HOXA7P31268 230 aaPredicted RBP19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 NUCB2P80303 420 aa19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 IFFO2Q5TF58 517 aa19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 FBXL16Q8N461 479 aa19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 NBPF3Q9H094 633 aa19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 SLKQ9H2G2 1235 aaPredicted RBP19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 MKNK2Q9HBH9 465 aa19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 TMOD4Q9NZQ9 345 aa19.3■□□□□ 0.68
PDLIM1-201ENST00000329399 ZNF213O14771 459 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 EEF2P13639 858 aaKnown RBP19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 ADCK5Q3MIX3 580 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 FAM47AQ5JRC9 791 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 ANKRD13CQ8N6S4 541 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 ERO1AQ96HE7 468 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 TRIM47Q96LD4 638 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 C12orf42Q96LP6 360 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 FEZ1Q99689 392 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 TXNRD2Q9NNW7 524 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 WDR19Q8NEZ3 1342 aa19.29■□□□□ 0.68
PDLIM1-201ENST00000329399 VCAM1P19320 739 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 AK2P54819 239 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 ICA1Q05084 483 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 EFCC1Q9HA90 598 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 TAOK2Q9UL54 1235 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 IGKV6D-41A0A0C4DH26 115 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 NT5C2P49902 561 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 HAND2P61296 217 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 DHX32Q7L7V1 743 aaKnown RBP19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 SPICE1Q8N0Z3 855 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 SMCR8Q8TEV9 937 aaPredicted RBP19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 TMX2Q9Y320 296 aa19.28■□□□□ 0.68
PDLIM1-201ENST00000329399 MYH8P13535 1937 aa19.27■□□□□ 0.68
PDLIM1-201ENST00000329399 PSMC4P43686 418 aa19.27■□□□□ 0.67
PDLIM1-201ENST00000329399 ATP2B2Q01814 1243 aa19.27■□□□□ 0.67
PDLIM1-201ENST00000329399 RBPJLQ9UBG7 517 aa19.27■□□□□ 0.67
PDLIM1-201ENST00000329399 ANAPC4Q9UJX5 808 aa19.27■□□□□ 0.67
PDLIM1-201ENST00000329399 HPS5Q9UPZ3 1129 aa19.27■□□□□ 0.67
PDLIM1-201ENST00000329399 DOCK3Q8IZD9 2030 aa19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 OSBPP22059 807 aa19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 HERVK_113P62684 666 aa19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 Q3C1V9 767 aa19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 CATSPERGQ6ZRH7 1159 aa19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 ZNF444Q8N0Y2 327 aaPredicted RBP19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 RPAP3Q9H6T3 665 aaPredicted RBP19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 KANSL2Q9H9L4 492 aa19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 PTPN22Q9Y2R2 807 aa19.26■□□□□ 0.67
PDLIM1-201ENST00000329399 E7EWF7 191 aa19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 NMT2O60551 498 aa19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 USP14P54578 494 aa19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 IRX3P78415 501 aaPredicted RBP19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 TFAP4Q01664 338 aa19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 TRDNQ13061 729 aa19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 FBXO46Q6PJ61 603 aaPredicted RBP19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 CEP95Q96GE4 821 aa19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 GREB1LQ9C091 1923 aaPredicted RBP19.25■□□□□ 0.67
PDLIM1-201ENST00000329399 CNMDO75829 334 aa19.24■□□□□ 0.67
PDLIM1-201ENST00000329399 FGRP09769 529 aa19.24■□□□□ 0.67
PDLIM1-201ENST00000329399 PCP11498 1178 aaKnown RBP19.24■□□□□ 0.67
PDLIM1-201ENST00000329399 TBC1D10CQ8IV04 446 aa19.24■□□□□ 0.67
PDLIM1-201ENST00000329399 NCOA7Q8NI08 942 aa19.24■□□□□ 0.67
PDLIM1-201ENST00000329399 CNNM2Q9H8M5 875 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms