RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 HLTFQ14527 1009 aaKnown RBP eCLIP4.45□□□□□ -1.7
USH2A-201ENST00000307340 EMBQ6PCB8 327 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 CARD10Q9BWT7 1032 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 A0A1B0GUL7 405 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 LONP1P36776 959 aaKnown RBP4.45□□□□□ -1.7
USH2A-201ENST00000307340 PABPC4Q13310 644 aaKnown RBP eCLIP4.45□□□□□ -1.7
USH2A-201ENST00000307340 CCDC125Q86Z20 511 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 KBTBD3Q8NAB2 608 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 CATSPER1Q8NEC5 780 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 EXOC5O00471 708 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 XRCC5P13010 732 aaKnown RBP4.45□□□□□ -1.7
USH2A-201ENST00000307340 NAA20P61599 178 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 EPC1Q9H2F5 836 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 SPATS2LQ9NUQ6 558 aaKnown RBP4.45□□□□□ -1.7
USH2A-201ENST00000307340 SEL1LQ9UBV2 794 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 PFASO15067 1338 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 WDR17Q8IZU2 1322 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 EFHD1Q9BUP0 239 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 GGNBP2Q9H3C7 697 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 GINM1Q9NU53 330 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 DUOX1Q9NRD9 1551 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 PLEKHG3A1L390 1219 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 CCDC188H7C350 402 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 TMEM132EQ6IEE7 984 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 TTLL7Q6ZT98 887 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 PRM3Q9NNZ6 103 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 NKIRAS1Q9NYS0 192 aa4.45□□□□□ -1.7
USH2A-201ENST00000307340 ZNF330Q9Y3S2 320 aaPredicted RBP4.45□□□□□ -1.7
USH2A-201ENST00000307340 PPRC1Q5VV67 1664 aaKnown RBP4.45□□□□□ -1.7
USH2A-201ENST00000307340 DLG5Q8TDM6 1919 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 PPP1R12AO14974 1030 aaPredicted RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 GGPS1O95749 300 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 SMARCA1P28370 1054 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 SARM1Q6SZW1 724 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 PPP1R18Q6NYC8 613 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 RHPN1Q8TCX5 695 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 GBP5Q96PP8 586 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 SH3TC1Q8TE82 1336 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 MTIF2P46199 727 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 TDRD12Q587J7 1177 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 WDR44Q5JSH3 913 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 GKAP1Q5VSY0 366 aaPredicted RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 USP48Q86UV5 1035 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 PLA2G4DQ86XP0 818 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 PRPF31Q8WWY3 499 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 ARHGEF10LQ9HCE6 1279 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 RIC8AQ9NPQ8 531 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 C3P01024 1663 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 ABCC3O15438 1527 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 STK36Q9NRP7 1315 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 MYH2Q9UKX2 1941 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 XPOTO43592 962 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 FOSBP53539 338 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 GNG11P61952 73 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 SYCP3Q8IZU3 236 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 NGLY1Q96IV0 654 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 MAP3K14Q99558 947 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 CCDC68Q9H2F9 335 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 BCCIPQ9P287 314 aaKnown RBP eCLIP4.44□□□□□ -1.7
USH2A-201ENST00000307340 UBE3CQ15386 1083 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 LRRC63Q05C16 580 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 GRAMD1AQ96CP6 724 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 CAPN2P17655 700 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 GRM1Q13255 1194 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 MBIPQ9NS73 344 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 SYNPO2Q9UMS6 1093 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 SETD1AO15047 1707 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 TAP1Q03518 808 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 TSGA10IPQ3SY00 556 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 CLEC4GQ6UXB4 293 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 JDP2Q8WYK2 163 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 DDX27Q96GQ7 796 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 CHMP4BP1P59074 171 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 ZKSCAN3Q9BRR0 538 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 RRP7AQ9Y3A4 280 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 APOA4P06727 396 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 C4orf22Q6V702 233 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 ENOSF1Q7L5Y1 443 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 ERVV-1B6SEH8 477 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 SSBP05455 408 aaKnown RBP eCLIP4.44□□□□□ -1.7
USH2A-201ENST00000307340 KRT10P13645 584 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 RNF168Q8IYW5 571 aaPredicted RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 SMARCC2Q8TAQ2 1214 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 CPS1P31327 1500 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 IDH1O75874 414 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 SDSP20132 328 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 IDI1Q13907 227 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 ELMSAN1Q6PJG2 1045 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 BATF3Q9NR55 127 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 URI1O94763 535 aaPredicted RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 EXOC4Q96A65 974 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 THOC1Q96FV9 657 aaKnown RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 PPME1Q9Y570 386 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 CHL1O00533 1208 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 MTRQ99707 1265 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 FAM124BQ9H5Z6 455 aaPredicted RBP4.44□□□□□ -1.7
USH2A-201ENST00000307340 CCPG1Q9ULG6 757 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 ZWINTO95229 277 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 TRADDQ15628 312 aa4.44□□□□□ -1.7
USH2A-201ENST00000307340 MYO3BQ8WXR4 1341 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms