RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 DDX4Q9NQI0 724 aaKnown RBP17.59■□□□□ 0.41
SF3B4-201ENST00000271628 MAD2L2Q9UI95 211 aa17.59■□□□□ 0.41
SF3B4-201ENST00000271628 PLIN4Q96Q06 1357 aa17.59■□□□□ 0.41
SF3B4-201ENST00000271628 C21orf2O43822 256 aa17.59■□□□□ 0.41
SF3B4-201ENST00000271628 CUTAO60888 179 aa17.59■□□□□ 0.41
SF3B4-201ENST00000271628 TOP1P11387 765 aaKnown RBP17.59■□□□□ 0.41
SF3B4-201ENST00000271628 MARCKSP29966 332 aaPredicted RBP17.59■□□□□ 0.41
SF3B4-201ENST00000271628 NDUFA8P51970 172 aa17.59■□□□□ 0.41
SF3B4-201ENST00000271628 CCDC93Q567U6 631 aa17.59■□□□□ 0.41
SF3B4-201ENST00000271628 SH3GLB2Q9NR46 395 aa17.59■□□□□ 0.41
SF3B4-201ENST00000271628 hCG_1642624A0A1W2PR95 340 aa17.58■□□□□ 0.4
SF3B4-201ENST00000271628 TOB1P50616 345 aaPredicted RBP17.58■□□□□ 0.4
SF3B4-201ENST00000271628 CCDC125Q86Z20 511 aa17.58■□□□□ 0.4
SF3B4-201ENST00000271628 FAM177A1Q8N128 213 aaPredicted RBP17.58■□□□□ 0.4
SF3B4-201ENST00000271628 FAM200AQ8TCP9 573 aa17.58■□□□□ 0.4
SF3B4-201ENST00000271628 SDF4Q9BRK5 362 aa17.58■□□□□ 0.4
SF3B4-201ENST00000271628 DHX36Q9H2U1 1008 aaKnown RBP17.58■□□□□ 0.4
SF3B4-201ENST00000271628 CABP5Q9NP86 173 aa17.58■□□□□ 0.4
SF3B4-201ENST00000271628 USP25Q9UHP3 1055 aa17.58■□□□□ 0.4
SF3B4-201ENST00000271628 R3HCC1Q9Y3T6 440 aaKnown RBP17.58■□□□□ 0.4
SF3B4-201ENST00000271628 MRVI1Q9Y6F6 885 aa17.58■□□□□ 0.4
SF3B4-201ENST00000271628 PALM3A6NDB9 673 aaPredicted RBP17.57■□□□□ 0.4
SF3B4-201ENST00000271628 PPIP5K2O43314 1243 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 NPM3O75607 178 aaKnown RBP17.57■□□□□ 0.4
SF3B4-201ENST00000271628 ADCY5O95622 1261 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 CALML3P27482 149 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 SMARCA1P28370 1054 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 OXER1Q8TDS5 423 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 CEP95Q96GE4 821 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 PSMD1Q99460 953 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 EHD4Q9H223 541 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.57■□□□□ 0.42e-6■■■□□ 15.2
SF3B4-201ENST00000271628 MORC2Q9Y6X9 1032 aaPredicted RBP17.57■□□□□ 0.4
SF3B4-201ENST00000271628 SCN9AQ15858 1988 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 RBM5P52756 815 aaKnown RBP eCLIP17.57■□□□□ 0.4
SF3B4-201ENST00000271628 NLRP5P59047 1200 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 STAG2Q8N3U4 1231 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 KRI1Q8N9T8 703 aaKnown RBP17.57■□□□□ 0.4
SF3B4-201ENST00000271628 SHISA4Q96DD7 197 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 TIGD1Q96MW7 591 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 IDI2Q9BXS1 227 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 VPS33BQ9H267 617 aa17.57■□□□□ 0.4
SF3B4-201ENST00000271628 FAM237AA0A1B0GTK4 181 aa17.56■□□□□ 0.4
SF3B4-201ENST00000271628 ZNF202O95125 648 aa17.56■□□□□ 0.4
SF3B4-201ENST00000271628 BMP15O95972 392 aa17.56■□□□□ 0.4
SF3B4-201ENST00000271628 PPP4R3BQ5MIZ7 849 aa17.56■□□□□ 0.4
SF3B4-201ENST00000271628 UBE2Q2Q8WVN8 375 aa17.56■□□□□ 0.4
SF3B4-201ENST00000271628 ZNF646O15015 1829 aaPredicted RBP17.56■□□□□ 0.4
SF3B4-201ENST00000271628 MYH8P13535 1937 aa17.56■□□□□ 0.4
SF3B4-201ENST00000271628 PARP1P09874 1014 aaKnown RBP17.56■□□□□ 0.4
SF3B4-201ENST00000271628 PFKFB1P16118 471 aa17.56■□□□□ 0.4
SF3B4-201ENST00000271628 MTMR4Q9NYA4 1195 aa17.56■□□□□ 0.4
SF3B4-201ENST00000271628 KLRF2D3W0D1 207 aa17.55■□□□□ 0.4
SF3B4-201ENST00000271628 ANO6Q4KMQ2 910 aa17.55■□□□□ 0.4
SF3B4-201ENST00000271628 SOGA3Q5TF21 947 aa17.55■□□□□ 0.4
SF3B4-201ENST00000271628 CCDC17Q96LX7 622 aa17.55■□□□□ 0.4
SF3B4-201ENST00000271628 SPZ1Q9BXG8 430 aa17.55■□□□□ 0.4
SF3B4-201ENST00000271628 HPSEQ9Y251 543 aa17.55■□□□□ 0.4
SF3B4-201ENST00000271628 TRIM75PA6NK02 468 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 PTPREP23469 700 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 SYKP43405 635 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 NPY5RQ15761 445 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 RESP18Q5W5W9 173 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 GALNT17Q6IS24 598 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 ZNF579Q8NAF0 562 aaKnown RBP17.54■□□□□ 0.4
SF3B4-201ENST00000271628 PCDHB6Q9Y5E3 794 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 ADAMTSL1Q8N6G6 1762 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 KCNA3P22001 575 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 TRAPPC10P48553 1259 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 NFIAQ12857 509 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 STX1AQ16623 288 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 SHC4Q6S5L8 630 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 CCDC148Q8NFR7 591 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 TNFRSF25Q93038 417 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 PI4KBQ9UBF8 816 aa17.54■□□□□ 0.4
SF3B4-201ENST00000271628 SRPRBQ9Y5M8 271 aaKnown RBP17.54■□□□□ 0.4
SF3B4-201ENST00000271628 IGKV6D-41A0A0C4DH26 115 aa17.53■□□□□ 0.4
SF3B4-201ENST00000271628 TTLL1O95922 423 aa17.53■□□□□ 0.4
SF3B4-201ENST00000271628 DPEP1P16444 411 aa17.53■□□□□ 0.4
SF3B4-201ENST00000271628 PIBF1Q8WXW3 757 aa17.53■□□□□ 0.4
SF3B4-201ENST00000271628 TPM3P06753 285 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 AKR1B1P15121 316 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 SHMT1P34896 483 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 ZNF165P49910 485 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 TGFB2P61812 414 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 GLIPR1L2Q4G1C9 344 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 PDCL3Q9H2J4 239 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 ANO10Q9NW15 660 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 FAM13BQ9NYF5 915 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 KIAA1468Q9P260 1216 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 MTMR7Q9Y216 660 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 BAZ2BQ9UIF8 2168 aaKnown RBP17.52■□□□□ 0.4
SF3B4-201ENST00000271628 PSME4Q14997 1843 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 KIF13BQ9NQT8 1826 aa17.52■□□□□ 0.4
SF3B4-201ENST00000271628 YDJCA8MPS7 323 aa17.52■□□□□ 0.39
SF3B4-201ENST00000271628 CYTH3O43739 400 aa17.52■□□□□ 0.39
SF3B4-201ENST00000271628 ZRSR1Q15695 479 aaKnown RBP17.52■□□□□ 0.39
SF3B4-201ENST00000271628 FOXP4Q8IVH2 680 aaPredicted RBP17.52■□□□□ 0.39
SF3B4-201ENST00000271628 BLIDQ8IZY5 108 aa17.52■□□□□ 0.39
SF3B4-201ENST00000271628 CCDC12Q8WUD4 166 aaPredicted RBP17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms