RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 NUP133Q8WUM0 1156 aa12.77□□□□□ -0.36
MSH3-201ENST00000265081 IL17AQ16552 155 aa12.77□□□□□ -0.37
MSH3-201ENST00000265081 C16orf86Q6ZW13 317 aa12.77□□□□□ -0.37
MSH3-201ENST00000265081 SH3RF3Q8TEJ3 882 aaPredicted RBP12.77□□□□□ -0.37
MSH3-201ENST00000265081 CRAMP1Q96RY5 1269 aa12.77□□□□□ -0.37
MSH3-201ENST00000265081 SERTAD1Q9UHV2 236 aa12.77□□□□□ -0.37
MSH3-201ENST00000265081 V9GY48 417 aaPredicted RBP12.77□□□□□ -0.37
MSH3-201ENST00000265081 PALM3A6NDB9 673 aaPredicted RBP12.77□□□□□ -0.37
MSH3-201ENST00000265081 TUBB4AP04350 444 aa12.77□□□□□ -0.37
MSH3-201ENST00000265081 ATP2B4P23634 1241 aa12.77□□□□□ -0.37
MSH3-201ENST00000265081 CNBD1Q8NA66 436 aa12.77□□□□□ -0.37
MSH3-201ENST00000265081 RIOK3O14730 519 aaKnown RBP12.76□□□□□ -0.37
MSH3-201ENST00000265081 CBFA2T2O43439 604 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 LDHBP07195 334 aaKnown RBP12.76□□□□□ -0.37
MSH3-201ENST00000265081 SKILP12757 684 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 GTF2E1P29083 439 aaPredicted RBP12.76□□□□□ -0.37
MSH3-201ENST00000265081 SEMA3FQ13275 785 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 E4F1Q66K89 784 aaPredicted RBP12.76□□□□□ -0.37
MSH3-201ENST00000265081 GALNT17Q6IS24 598 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 PDXDC2PQ6P474 469 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 FCHSD1Q86WN1 690 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 DRC7Q8IY82 874 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 USP27XA6NNY8 438 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 ADAMTS3O15072 1205 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 POLR2DO15514 142 aaKnown RBP12.76□□□□□ -0.37
MSH3-201ENST00000265081 ATP1A3P13637 1013 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 RFC4P35249 363 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 PLCD1P51178 756 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 FAM196AQ6ZSG2 479 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 TMC4Q7Z404 712 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 PRDM1O75626 825 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 RHBDL3P58872 404 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 FMR1Q06787 632 aaKnown RBP eCLIP12.76□□□□□ -0.37
MSH3-201ENST00000265081 USP49Q70CQ1 688 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 DPF2Q92785 391 aa12.76□□□□□ -0.37
MSH3-201ENST00000265081 UBAP1LF5GYI3 381 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 BIN1O00499 593 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 USP17L8P0C7I0 530 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 PBX1P40424 430 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 CDKAL1Q5VV42 579 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 TOMM22Q9NS69 142 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 POLRMTO00411 1230 aaKnown RBP12.75□□□□□ -0.37
MSH3-201ENST00000265081 RASA1P20936 1047 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 KIF5BP33176 963 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 NOM1Q5C9Z4 860 aaKnown RBP12.75□□□□□ -0.37
MSH3-201ENST00000265081 PAGE5Q96GU1 130 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 PYM1Q9BRP8 204 aaKnown RBP12.75□□□□□ -0.37
MSH3-201ENST00000265081 DACH1Q9UI36 760 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 FECHP22830 423 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 TTC38Q5R3I4 469 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 CTCFLQ8NI51 663 aaPredicted RBP12.75□□□□□ -0.37
MSH3-201ENST00000265081 GSDMAQ96QA5 445 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 LZTS2Q9BRK4 669 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 SPZ1Q9BXG8 430 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 CD209Q9NNX6 404 aa12.75□□□□□ -0.37
MSH3-201ENST00000265081 BBOX1O75936 387 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 FAM47AQ5JRC9 791 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 DZIP1Q86YF9 867 aaKnown RBP12.74□□□□□ -0.37
MSH3-201ENST00000265081 BRMS1Q9HCU9 246 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 PCDHA4Q9UN74 947 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 SUGT1Q9Y2Z0 365 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 SYMPKQ92797 1274 aaKnown RBP12.74□□□□□ -0.37
MSH3-201ENST00000265081 MYO3BQ8WXR4 1341 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 IGKV6D-41A0A0C4DH26 115 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 A0A0G2JS52 829 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 A0A1B0GTH6 734 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 OLFM4Q6UX06 510 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 CCDC112Q8NEF3 446 aa12.74□□□□□ -0.37
MSH3-201ENST00000265081 MYH4Q9Y623 1939 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 KIF2AO00139 706 aaPredicted RBP12.73□□□□□ -0.37
MSH3-201ENST00000265081 VEGFAP15692 232 aaPredicted RBP12.73□□□□□ -0.37
MSH3-201ENST00000265081 CALML3P27482 149 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 AKAP17AQ02040 695 aaKnown RBP12.73□□□□□ -0.37
MSH3-201ENST00000265081 NR1I3Q14994 352 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 SMARCE1Q969G3 411 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 RBM17Q96I25 401 aaKnown RBP12.73□□□□□ -0.37
MSH3-201ENST00000265081 FANCLQ9NW38 375 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 AFF2P51816 1311 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 PPP1R3GB7ZBB8 358 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 CYTH3O43739 400 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 BAG3O95817 575 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 LDHCP07864 332 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 GNAQP50148 359 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 ZRSR1Q15695 479 aaKnown RBP12.73□□□□□ -0.37
MSH3-201ENST00000265081 CCDC93Q567U6 631 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 L2HGDHQ9H9P8 463 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 MCM9Q9NXL9 1143 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 STXBP3O00186 592 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 LONP1P36776 959 aaKnown RBP12.73□□□□□ -0.37
MSH3-201ENST00000265081 DDR1Q08345 913 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 SPECC1Q5M775 1068 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 BARHL2Q9NY43 387 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 FLT1P17948 1338 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 TNNT1P13805 278 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 PRPHP41219 470 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 GABPAQ06546 454 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 ORC2Q13416 577 aaPredicted RBP12.73□□□□□ -0.37
MSH3-201ENST00000265081 HSP90AA2PQ14568 343 aaPredicted RBP12.73□□□□□ -0.37
MSH3-201ENST00000265081 TYW1BQ6NUM6 668 aa12.73□□□□□ -0.37
MSH3-201ENST00000265081 PNMA1Q8ND90 353 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms