RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 RRP1BQ14684 758 aaKnown RBP26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 PKN1Q16512 942 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 ABCB5Q2M3G0 1257 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 KRT40Q6A162 431 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 KANSL2Q9H9L4 492 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 CLIP2Q9UDT6 1046 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 HACL1Q9UJ83 578 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 CNPY2Q9Y2B0 182 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 MYH15Q9Y2K3 1946 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 AKAP17AQ02040 695 aaKnown RBP26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 C9orf131Q5VYM1 1079 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 FAM173BQ6P4H8 233 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 TMEM87AQ8NBN3 555 aa26.54■■□□□ 1.84
SMARCB1-201ENST00000263121 MYH4Q9Y623 1939 aa26.53■■□□□ 1.84
SMARCB1-201ENST00000263121 GDF11O95390 407 aa26.53■■□□□ 1.84
SMARCB1-201ENST00000263121 LRRC47Q8N1G4 583 aaKnown RBP26.53■■□□□ 1.84
SMARCB1-201ENST00000263121 TRPM4Q8TD43 1214 aa26.53■■□□□ 1.84
SMARCB1-201ENST00000263121 TEPSINQ96N21 525 aa26.53■■□□□ 1.84
SMARCB1-201ENST00000263121 NYAP2Q9P242 653 aa26.53■■□□□ 1.84
SMARCB1-201ENST00000263121 V9GY48 417 aaPredicted RBP26.53■■□□□ 1.84
SMARCB1-201ENST00000263121 SNHG28P0DPA3 235 aa26.52■■□□□ 1.84
SMARCB1-201ENST00000263121 JAG1P78504 1218 aa26.52■■□□□ 1.84
SMARCB1-201ENST00000263121 RASGRP2Q7LDG7 609 aa26.52■■□□□ 1.84
SMARCB1-201ENST00000263121 MKL1Q969V6 931 aa26.52■■□□□ 1.84
SMARCB1-201ENST00000263121 LZTS2Q9BRK4 669 aa26.52■■□□□ 1.84
SMARCB1-201ENST00000263121 PRPF40AO75400 957 aaKnown RBP26.51■■□□□ 1.83
SMARCB1-201ENST00000263121 PARP1P09874 1014 aaKnown RBP26.51■■□□□ 1.83
SMARCB1-201ENST00000263121 PDHBP11177 359 aa26.51■■□□□ 1.83
SMARCB1-201ENST00000263121 TRIM29Q14134 588 aa26.51■■□□□ 1.83
SMARCB1-201ENST00000263121 SEPT2Q15019 361 aa26.51■■□□□ 1.83
SMARCB1-201ENST00000263121 MTMR7Q9Y216 660 aa26.51■■□□□ 1.83
SMARCB1-201ENST00000263121 TRAK2O60296 914 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 DDNO94850 711 aaPredicted RBP26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 EPS15P42566 896 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 KIF23Q02241 960 aaPredicted RBP26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 SLC35G1Q2M3R5 365 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 GDPD2Q9HCC8 539 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 RBM27Q9P2N5 1060 aaKnown RBP26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 USP17L5A8MUK1 530 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 GH2P01242 217 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 EEF2P13639 858 aaKnown RBP26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 KRT85P78386 507 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 USP17L2Q6R6M4 530 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 SIAH1Q8IUQ4 282 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 CABP5Q9NP86 173 aa26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 SCAF8Q9UPN6 1271 aaKnown RBP26.5■■□□□ 1.83
SMARCB1-201ENST00000263121 KLRF2D3W0D1 207 aa26.49■■□□□ 1.83
SMARCB1-201ENST00000263121 NCLP19338 710 aaKnown RBP26.49■■□□□ 1.83
SMARCB1-201ENST00000263121 ICA1Q05084 483 aa26.49■■□□□ 1.83
SMARCB1-201ENST00000263121 SPZ1Q9BXG8 430 aa26.49■■□□□ 1.83
SMARCB1-201ENST00000263121 hCG_1642624A0A1W2PR95 340 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 KIF28PB7ZC32 967 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 CYTH3O43739 400 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 GOLGA8HP0CJ92 632 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 SMARCA1P28370 1054 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 SKOR2Q2VWA4 1001 aaPredicted RBP26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 ASPRV1Q53RT3 343 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 BRAPQ7Z569 592 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 USP48Q86UV5 1035 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 APOBEC3FQ8IUX4 373 aaKnown RBP26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 SHISA4Q96DD7 197 aa26.48■■□□□ 1.83
SMARCB1-201ENST00000263121 UTRNP46939 3433 aa26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 MMP1P03956 469 aa26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 HIRAP54198 1017 aaPredicted RBP26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 ATP2B2Q01814 1243 aa26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 PFKFB3Q16875 520 aaPredicted RBP26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 MIGA2Q7L4E1 593 aa26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 DEFB129Q9H1M3 183 aa26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 FIBPO43427 364 aa26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 GPR162Q16538 588 aa26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 ANGEL2Q5VTE6 544 aaKnown RBP26.47■■□□□ 1.83
SMARCB1-201ENST00000263121 SCG2P13521 617 aa26.46■■□□□ 1.83
SMARCB1-201ENST00000263121 U2AF2P26368 475 aaKnown RBP eCLIP26.46■■□□□ 1.833e-8■□□□□ 9.3
SMARCB1-201ENST00000263121 CSPP1Q1MSJ5 1256 aa26.46■■□□□ 1.83
SMARCB1-201ENST00000263121 ATL3Q6DD88 541 aa26.46■■□□□ 1.83
SMARCB1-201ENST00000263121 ZBTB21Q9ULJ3 1066 aa26.46■■□□□ 1.83
SMARCB1-201ENST00000263121 KCNJ14Q9UNX9 436 aa26.46■■□□□ 1.83
SMARCB1-201ENST00000263121 XBP1P17861 261 aa26.45■■□□□ 1.82
SMARCB1-201ENST00000263121 ZNF543Q08ER8 600 aa26.45■■□□□ 1.82
SMARCB1-201ENST00000263121 VPS54Q9P1Q0 977 aa26.45■■□□□ 1.82
SMARCB1-201ENST00000263121 SYNPO2Q9UMS6 1093 aa26.45■■□□□ 1.82
SMARCB1-201ENST00000263121 LMOD1P29536 600 aaPredicted RBP26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 CAP2P40123 477 aa26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 SCAND2PQ9GZW5 306 aaPredicted RBP26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 ADARB2Q9NS39 739 aaKnown RBP26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 TFIP11Q9UBB9 837 aaKnown RBP26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 ZNF396Q96N95 335 aaPredicted RBP26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 PHF20Q9BVI0 1012 aa26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 GGA3Q9NZ52 723 aa26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 CFAP45Q9UL16 551 aa26.44■■□□□ 1.82
SMARCB1-201ENST00000263121 ELP1O95163 1332 aa26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 FRMPD2Q68DX3 1309 aaPredicted RBP26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 PHF20L1A8MW92 1017 aa26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 GRIN3BO60391 1043 aa26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 SAFBQ15424 915 aaKnown RBP eCLIP26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 KLHL40Q2TBA0 621 aa26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 GPATCH4Q5T3I0 446 aaKnown RBP26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 GMCL1P1Q8NEA9 526 aa26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 CPVLQ9H3G5 476 aa26.43■■□□□ 1.82
SMARCB1-201ENST00000263121 RIOX1Q9H6W3 641 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms