RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W YSP3P25036 478 aa14.19□□□□□ -0.14
DEP1YAL013W GEX1P25596 615 aa14.19□□□□□ -0.14
DEP1YAL013W DEP1P31385 405 aa14.19□□□□□ -0.14
DEP1YAL013W AEP1P32493 518 aa14.19□□□□□ -0.14
DEP1YAL013W GEX2P36173 615 aa14.19□□□□□ -0.14
DEP1YAL013W HSM3P38348 480 aa14.19□□□□□ -0.14
DEP1YAL013W YJL206CP39529 758 aa14.19□□□□□ -0.14
DEP1YAL013W SEC28P40509 296 aaKnown RBP14.19□□□□□ -0.14
DEP1YAL013W OYE3P41816 400 aaPredicted RBP14.19□□□□□ -0.14
DEP1YAL013W SUB1P54000 292 aaKnown RBP14.19□□□□□ -0.14
DEP1YAL013W UBX4P54730 416 aa14.19□□□□□ -0.14
DEP1YAL013W PIR1Q03178 341 aa14.19□□□□□ -0.14
DEP1YAL013W VPS16Q03308 798 aa14.19□□□□□ -0.14
DEP1YAL013W TAF11Q04226 346 aa14.19□□□□□ -0.14
DEP1YAL013W TMN2Q04562 672 aa14.19□□□□□ -0.14
DEP1YAL013W SCH9P11792 824 aaKnown RBP14.18□□□□□ -0.14
DEP1YAL013W SST2P11972 698 aaKnown RBP14.18□□□□□ -0.14
DEP1YAL013W SIR1P21691 654 aa14.18□□□□□ -0.14
DEP1YAL013W AAD3P25612 363 aa14.18□□□□□ -0.14
DEP1YAL013W TYE7P33122 291 aaPredicted RBP14.18□□□□□ -0.14
DEP1YAL013W COY1P34237 679 aa14.18□□□□□ -0.14
DEP1YAL013W RRP14P36080 434 aaKnown RBP14.18□□□□□ -0.14
DEP1YAL013W COG1P53079 417 aa14.18□□□□□ -0.14
DEP1YAL013W REG1Q00816 1014 aa14.18□□□□□ -0.14
DEP1YAL013W YDR132CQ03900 495 aa14.18□□□□□ -0.14
DEP1YAL013W YDR109CQ04585 715 aa14.18□□□□□ -0.14
DEP1YAL013W YLR177WQ06251 628 aa14.18□□□□□ -0.14
DEP1YAL013W NOT5Q12514 560 aaPredicted RBP14.18□□□□□ -0.14
DEP1YAL013W GLN4P13188 809 aaKnown RBP14.17□□□□□ -0.14
DEP1YAL013W DAL81P21657 970 aa14.17□□□□□ -0.14
DEP1YAL013W BAS1P22035 811 aa14.17□□□□□ -0.14
DEP1YAL013W KIN3P22209 435 aa14.17□□□□□ -0.14
DEP1YAL013W DUN1P39009 513 aa14.17□□□□□ -0.14
DEP1YAL013W SAP4P53036 818 aa14.17□□□□□ -0.14
DEP1YAL013W AIM14P53109 570 aa14.17□□□□□ -0.14
DEP1YAL013W EFM6P53970 246 aa14.17□□□□□ -0.14
DEP1YAL013W YMR102CQ03177 834 aa14.17□□□□□ -0.14
DEP1YAL013W ADY3Q07732 790 aa14.17□□□□□ -0.14
DEP1YAL013W PRP16P15938 1071 aaPredicted RBP14.16□□□□□ -0.14
DEP1YAL013W PHA2P32452 334 aa14.16□□□□□ -0.14
DEP1YAL013W YSC84P32793 468 aa14.16□□□□□ -0.14
DEP1YAL013W IMP3P32899 183 aaPredicted RBP14.16□□□□□ -0.14
DEP1YAL013W GGA2P38817 585 aaKnown RBP14.16□□□□□ -0.14
DEP1YAL013W PET117Q02771 107 aa14.16□□□□□ -0.14
DEP1YAL013W PDH1Q12428 516 aaKnown RBP14.16□□□□□ -0.14
DEP1YAL013W CCH1P50077 2039 aa14.15□□□□□ -0.14
DEP1YAL013W DCC1P25559 380 aa14.15□□□□□ -0.14
DEP1YAL013W BEM1P29366 551 aa14.15□□□□□ -0.14
DEP1YAL013W GUT2P32191 649 aa14.15□□□□□ -0.14
DEP1YAL013W TFA2P36145 328 aa14.15□□□□□ -0.14
DEP1YAL013W HEK2P38199 381 aaKnown RBP RIP-Chip data14.15□□□□□ -0.14not detected
DEP1YAL013W PHO89P38361 574 aa14.15□□□□□ -0.14
DEP1YAL013W YHR182WP38870 785 aa14.15□□□□□ -0.14
DEP1YAL013W SLX8P40072 274 aa14.15□□□□□ -0.14
DEP1YAL013W RGI2P40188 164 aa14.15□□□□□ -0.14
DEP1YAL013W YJR061WP40355 935 aa14.15□□□□□ -0.14
DEP1YAL013W SIP4P46954 829 aa14.15□□□□□ -0.14
DEP1YAL013W AIM23P47015 356 aa14.15□□□□□ -0.14
DEP1YAL013W ORC3P54790 616 aa14.15□□□□□ -0.14
DEP1YAL013W CLP1Q08685 445 aaPredicted RBP14.15□□□□□ -0.14
DEP1YAL013W RIB2Q12362 591 aaKnown RBP14.15□□□□□ -0.14
DEP1YAL013W RAM1P22007 431 aa14.14□□□□□ -0.15
DEP1YAL013W RBK1P25332 333 aa14.14□□□□□ -0.15
DEP1YAL013W GCD11P32481 527 aaKnown RBP14.14□□□□□ -0.15
DEP1YAL013W TOM20P35180 183 aa14.14□□□□□ -0.15
DEP1YAL013W CTF13P35203 478 aa14.14□□□□□ -0.15
DEP1YAL013W GND1P38720 489 aaKnown RBP14.14□□□□□ -0.15
DEP1YAL013W DOT6P40059 670 aaKnown RBP14.14□□□□□ -0.15
DEP1YAL013W HOS4P40480 1083 aa14.14□□□□□ -0.15
DEP1YAL013W ERG10P41338 398 aaKnown RBP14.14□□□□□ -0.15
DEP1YAL013W FAR3P46671 204 aa14.14□□□□□ -0.15
DEP1YAL013W ARH1P48360 493 aa14.14□□□□□ -0.15
DEP1YAL013W SPP2Q02521 185 aa14.14□□□□□ -0.15
DEP1YAL013W MCP2Q06567 569 aa14.14□□□□□ -0.15
DEP1YAL013W FLC1Q08967 793 aa14.14□□□□□ -0.15
DEP1YAL013W PER33Q12144 273 aa14.14□□□□□ -0.15
DEP1YAL013W YPT6Q99260 215 aa14.14□□□□□ -0.15
DEP1YAL013W YPR117WQ06116 2489 aa14.13□□□□□ -0.15
DEP1YAL013W EMC1P25574 760 aa14.13□□□□□ -0.15
DEP1YAL013W SWE1P32944 819 aa14.13□□□□□ -0.15
DEP1YAL013W YDR089WP38966 869 aa14.13□□□□□ -0.15
DEP1YAL013W PAN6P40459 309 aa14.13□□□□□ -0.15
DEP1YAL013W ARC1P46672 376 aaKnown RBP14.13□□□□□ -0.15
DEP1YAL013W MAD3P47074 515 aa14.13□□□□□ -0.15
DEP1YAL013W VEL1P53058 206 aa14.13□□□□□ -0.15
DEP1YAL013W IST1P53843 298 aaPredicted RBP14.13□□□□□ -0.15
DEP1YAL013W FRT1Q99332 602 aa14.13□□□□□ -0.15
DEP1YAL013W STE2D6VTK4 431 aa14.12□□□□□ -0.15
DEP1YAL013W AMD1P15274 810 aaKnown RBP14.12□□□□□ -0.15
DEP1YAL013W PYC2P32327 1180 aaKnown RBP14.12□□□□□ -0.15
DEP1YAL013W SCD5P34758 872 aa14.12□□□□□ -0.15
DEP1YAL013W PHO11P35842 467 aa14.12□□□□□ -0.15
DEP1YAL013W PHO12P38693 467 aa14.12□□□□□ -0.15
DEP1YAL013W HAT2P39984 401 aa14.12□□□□□ -0.15
DEP1YAL013W TES1P41903 349 aaKnown RBP14.12□□□□□ -0.15
DEP1YAL013W PRM1P53835 661 aa14.12□□□□□ -0.15
DEP1YAL013W YDR131CQ03899 556 aa14.12□□□□□ -0.15
DEP1YAL013W NSP1P14907 823 aaKnown RBP14.11□□□□□ -0.15
DEP1YAL013W MNE1P24720 663 aa14.11□□□□□ -0.15
DEP1YAL013W MRE11P32829 692 aa14.11□□□□□ -0.15
Retrieved 100 of 5,963 RNA–protein pairs in 113.2 ms