RNA–Protein interactions for RNA: ENST00000612467.1

PCDHGA3-202, Transcript of protocadherin gamma subfamily A, 3, humanhuman

TSL 2

Gene PCDHGA3, Length 2,712 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3-202ENST00000612467 SMYD4Q8IYR2 804 aaPredicted RBP16.15■□□□□ 0.18
PCDHGA3-202ENST00000612467 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.15■□□□□ 0.18
PCDHGA3-202ENST00000612467 TNRC6CQ9HCJ0 1690 aaKnown RBP16.14■□□□□ 0.18
PCDHGA3-202ENST00000612467 UBASH3AP57075 661 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 MYL5Q02045 173 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 VPS72Q15906 364 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 CEP135Q66GS9 1140 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 E4F1Q66K89 784 aaPredicted RBP16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 PHF20Q9BVI0 1012 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 INTS13Q9NVM9 706 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 TSPY2A6NKD2 308 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 UBAP1LF5GYI3 381 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 DZIP1Q86YF9 867 aaKnown RBP16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 CCAR2Q8N163 923 aaKnown RBP16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 RASGRP4Q8TDF6 673 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 SH3RF3Q8TEJ3 882 aaPredicted RBP16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 GPKOWQ92917 476 aaPredicted RBP eCLIP16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 CPVLQ9H3G5 476 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 SAP30BPQ9UHR5 308 aaKnown RBP16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 CNTNAP5Q8WYK1 1306 aa16.14■□□□□ 0.17
PCDHGA3-202ENST00000612467 BTAF1O14981 1849 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 USP17L3A6NCW0 530 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 USP17L4A6NCW7 530 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 SMTNL1A8MU46 457 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 CDC25AP30304 524 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 KRT2P35908 639 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 FAM196AQ6ZSG2 479 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 TMTC3Q6ZXV5 915 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 USP17L1Q7RTZ2 530 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 STAG2Q8N3U4 1231 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 CRNKL1Q9BZJ0 848 aaKnown RBP16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 OSBPL5Q9H0X9 879 aaPredicted RBP16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 ACTN4O43707 911 aaKnown RBP16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 RCSD1Q6JBY9 416 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 OLFM4Q6UX06 510 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 NYXQ9GZU5 481 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 USP21Q9UK80 565 aa16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 SRPRBQ9Y5M8 271 aaKnown RBP16.13■□□□□ 0.17
PCDHGA3-202ENST00000612467 STX17P56962 302 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 KLHL10Q6JEL2 608 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 PIK3AP1Q6ZUJ8 805 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 SYMPKQ92797 1274 aaKnown RBP16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 SAMSN1Q9NSI8 373 aaKnown RBP16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 VWA3AA6NCI4 1184 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 TRIM75PA6NK02 468 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 PRPF3O43395 683 aaKnown RBP16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 SFPQP23246 707 aaKnown RBP eCLIP16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 RFC4P35249 363 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 PTPN14Q15678 1187 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 IL17RBQ9NRM6 502 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 LRRC4BQ9NT99 713 aa16.12■□□□□ 0.17
PCDHGA3-202ENST00000612467 IKBKBO14920 756 aa16.11■□□□□ 0.17
PCDHGA3-202ENST00000612467 TOM1O60784 492 aa16.11■□□□□ 0.17
PCDHGA3-202ENST00000612467 TPM4P67936 248 aa16.11■□□□□ 0.17
PCDHGA3-202ENST00000612467 TFAP4Q01664 338 aa16.11■□□□□ 0.17
PCDHGA3-202ENST00000612467 NYAP1Q6ZVC0 841 aa16.11■□□□□ 0.17
PCDHGA3-202ENST00000612467 FGRP09769 529 aa16.11■□□□□ 0.17
PCDHGA3-202ENST00000612467 NFE2L3Q9Y4A8 694 aa16.11■□□□□ 0.17
PCDHGA3-202ENST00000612467 IRS2Q9Y4H2 1338 aa16.11■□□□□ 0.17
PCDHGA3-202ENST00000612467 USP5P45974 858 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 PLCD1P51178 756 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 NCBP1Q09161 790 aaKnown RBP16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 MAPKAPK5Q8IW41 473 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 CTCFLQ8NI51 663 aaPredicted RBP16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 TGFBRAP1Q8WUH2 860 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 SMARCE1Q969G3 411 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 GOLGA8HP0CJ92 632 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 CD44P16070 742 aaKnown RBP16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 MCM7P33993 719 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 PTGDRQ13258 359 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 TYW1BQ6NUM6 668 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 ANKRD2Q9GZV1 360 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 BLZF1Q9H2G9 400 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 FAM205AQ6ZU69 1335 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 NLRP5P59047 1200 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 IL17AQ16552 155 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 SLC35G1Q2M3R5 365 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 CCDC112Q8NEF3 446 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 TNFRSF25Q93038 417 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 PPP1R13BQ96KQ4 1090 aa16.1■□□□□ 0.17
PCDHGA3-202ENST00000612467 GSDMDP57764 484 aa16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 LRRN4CLQ8ND94 238 aa16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 RGS22Q8NE09 1264 aa16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 MTA3Q9BTC8 594 aa16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 TMX1Q9H3N1 280 aa16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 CTIFO43310 598 aaKnown RBP16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 NEMFO60524 1076 aa16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 MORC3Q14149 939 aa16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 TTC38Q5R3I4 469 aa16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 RC3H1Q5TC82 1133 aaKnown RBP16.09■□□□□ 0.17
PCDHGA3-202ENST00000612467 SPDYE4A6NLX3 237 aa16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 ORC4O43929 436 aa16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 LDHBP07195 334 aaKnown RBP16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 XBP1P17861 261 aa16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 SARSP49591 514 aaKnown RBP16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 PPP4R3BQ5MIZ7 849 aa16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 TRAPPC3LQ5T215 181 aa16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 IMPACTQ9P2X3 320 aa16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 SEMA3EO15041 775 aa16.08■□□□□ 0.16
PCDHGA3-202ENST00000612467 RCAN1P53805 252 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms