RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 HMGCS2P54868 508 aa19.64■□□□□ 0.73
CCDC28A-202ENST00000611852 SH3D19Q5HYK7 790 aa19.64■□□□□ 0.73
CCDC28A-202ENST00000611852 FASTKD5Q7L8L6 764 aaKnown RBP19.64■□□□□ 0.73
CCDC28A-202ENST00000611852 CLEC10AQ8IUN9 316 aa19.64■□□□□ 0.73
CCDC28A-202ENST00000611852 ACER1Q8TDN7 264 aa19.64■□□□□ 0.73
CCDC28A-202ENST00000611852 LAMA4Q16363 1823 aa19.64■□□□□ 0.73
CCDC28A-202ENST00000611852 C19orf81C9J6K1 198 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 ORC4O43929 436 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 IMMTQ16891 758 aaKnown RBP19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 GPAT2Q6NUI2 795 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 KIAA1211Q6ZU35 1233 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 ANKRD23Q86SG2 305 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 SIAH1Q8IUQ4 282 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 TBC1D10CQ8IV04 446 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 MAP4K1Q92918 833 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 KANSL2Q9H9L4 492 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 TSKSQ9UJT2 592 aa19.63■□□□□ 0.73
CCDC28A-202ENST00000611852 ICA1Q05084 483 aa19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 DGKZQ13574 1117 aa19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 AKNAD1Q5T1N1 836 aa19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 GADL1Q6ZQY3 521 aa19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 PROCA1Q8NCQ7 364 aaPredicted RBP19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 STAG1Q8WVM7 1258 aa19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 CFHR5Q9BXR6 569 aa19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 LSG1Q9H089 658 aaKnown RBP19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 ZCCHC17Q9NP64 241 aaKnown RBP19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 U3KPZ7 1027 aaPredicted RBP19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 LOC285556D6RIA3 1793 aa19.62■□□□□ 0.73
CCDC28A-202ENST00000611852 A0A1W2PRG0 241 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 PCP11498 1178 aaKnown RBP19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 TFAP4Q01664 338 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 FAM47AQ5JRC9 791 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 MFSD6Q6ZSS7 791 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 NEDD1Q8NHV4 660 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 PLIN4Q96Q06 1357 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 FEZ1Q99689 392 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 KIAA1683Q9H0B3 1180 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 IGKV6D-41A0A0C4DH26 115 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 PDHXO00330 501 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 TBC1D8O95759 1140 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 TSPY3P0CV98 308 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 TSPY8P0CW00 308 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 TREML2Q5T2D2 321 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 RNF41Q9H4P4 317 aaPredicted RBP19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 ANO2Q9NQ90 1003 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 TOMM22Q9NS69 142 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 EMILIN3Q9NT22 766 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 AGTPBP1Q9UPW5 1226 aa19.61■□□□□ 0.73
CCDC28A-202ENST00000611852 RANBP6O60518 1105 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 HSPA8P11142 646 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 EEF2P13639 858 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 CTCFP49711 727 aaPredicted RBP19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 USP14P54578 494 aa19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 ZYXQ15942 572 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 RRP12Q5JTH9 1297 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 USP17L2Q6R6M4 530 aa19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 R3HDMLQ9H3Y0 253 aa19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 ARHGEF10LQ9HCE6 1279 aa19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 TMOD4Q9NZQ9 345 aa19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 RBM8AQ9Y5S9 174 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-202ENST00000611852 NEDD4P46934 1319 aa19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 TSPY2A6NKD2 308 aa19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 CYP21A2P08686 494 aa19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 CRHR2Q13324 411 aa19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 TAF1CQ15572 869 aaPredicted RBP19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 CEP95Q96GE4 821 aa19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 C12orf42Q96LP6 360 aa19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 SLC45A1Q9Y2W3 748 aa19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 TMX2Q9Y320 296 aa19.59■□□□□ 0.73
CCDC28A-202ENST00000611852 NKX2-3Q8TAU0 364 aa19.58■□□□□ 0.73
CCDC28A-202ENST00000611852 SH2D4AQ9H788 454 aa19.58■□□□□ 0.73
CCDC28A-202ENST00000611852 MTMR4Q9NYA4 1195 aa19.58■□□□□ 0.73
CCDC28A-202ENST00000611852 NYAP2Q9P242 653 aa19.58■□□□□ 0.73
CCDC28A-202ENST00000611852 LBX1P52954 281 aa19.57■□□□□ 0.72
CCDC28A-202ENST00000611852 ATP2B2Q01814 1243 aa19.57■□□□□ 0.72
CCDC28A-202ENST00000611852 ZFYVE28Q9HCC9 887 aa19.57■□□□□ 0.72
CCDC28A-202ENST00000611852 IL17RBQ9NRM6 502 aa19.57■□□□□ 0.72
CCDC28A-202ENST00000611852 NMT2O60551 498 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 TTLL1O95922 423 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 CYP2C8P10632 490 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 VCAM1P19320 739 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 HOXA7P31268 230 aaPredicted RBP19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 NT5C2P49902 561 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 KIAA1755Q5JYT7 1200 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 ESR2Q92731 530 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 MKL1Q969V6 931 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 PARK7Q99497 189 aaKnown RBP19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 VCPKMTQ9H867 229 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 CLIP2Q9UDT6 1046 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 TAF6LQ9Y6J9 622 aa19.56■□□□□ 0.72
CCDC28A-202ENST00000611852 TLR2O60603 784 aa19.55■□□□□ 0.72
CCDC28A-202ENST00000611852 PABPC4Q13310 644 aaKnown RBP eCLIP19.55■□□□□ 0.72
CCDC28A-202ENST00000611852 NECTIN1Q15223 517 aa19.55■□□□□ 0.72
CCDC28A-202ENST00000611852 NOM1Q5C9Z4 860 aaKnown RBP19.55■□□□□ 0.72
CCDC28A-202ENST00000611852 CNNM2Q9H8M5 875 aa19.55■□□□□ 0.72
CCDC28A-202ENST00000611852 TCP11L1Q9NUJ3 509 aa19.55■□□□□ 0.72
CCDC28A-202ENST00000611852 MYH4Q9Y623 1939 aa19.54■□□□□ 0.72
CCDC28A-202ENST00000611852 ADGRA2Q96PE1 1338 aa19.54■□□□□ 0.72
CCDC28A-202ENST00000611852 B4E1Z4 1266 aa19.54■□□□□ 0.72
CCDC28A-202ENST00000611852 GPR25O00155 361 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms